Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g01317 ATGGACAAATCACATAGTTTTCTTCATAGTCTTATCAAACACTTCAAATTTAGTTCCACCACAGAGAAAAACAATGAAGCTGATTTACAAAGAATGGCTTCACTTGAACAGAatatattttcttatgaaaCCCTTGTTTCTGCTACAAAGAATTTTAATGCTGTTCATAAGTTAGGTGAGGGTGGTTTTGGACCTGTCTTCAAgGGGAAATTGAGTGATGGGAGAGAAGTTGCAGTGAAGAAATTGTCACATACATCAAATCAAGGGAAGAAGGAGTTTATGAATGAGGCAAAGTTGTTGGCTCGTGTGCAGCATAAGAATGTGGTGAATTTGTTAGGTTATTGTGTTCATGGAGCAGAAAAGCTACTTGTTTATGAGTATGTTCCTCATGAGAGTCTTGACAAGCTTCTTTTCAAATCCGTAGATAAGAGGGAGCAGCTTGATTGGAAACGTAGGTTTGGAATAATCACAGGCGTGGCAAAGGGATTACTTTATCTCCATGAAGACTCACACCATTGCATAATCCATAGAGACATCAAAGCCAGTAATGTATTGCTTGATGACAAATGGACGCCCAAGATTGCTGATTTCGGAATGGCACGTCTCTTCCCCGAAGATCAGAGCCAAGTCAATACACGCGTGGCTGGTACCAATGGATATATGGCTCCTGAATATATGATGCATGGAAGACTTTCCGTCAAAGCTGACGTGTTTAGCTATGGGGTTTTGCTATTGGAGTTGATCACTGGCCAACGAAACTCTTCCTTTAATTTGGATGTGGAGCACCAAAACCTTCTTGATTGgGCATACAAGATGTACAAGAAAGGGAGGAGCTTAGAAATTGTAGATTCTACATTAGCATCTACAGTGTTAACAGAACAAGTAGCTATGTGCATTCAGCTTGCTCTGCTATGTACTCAAGGGGATCCACATCTACGTCCGACAATGAGACGAGTCGTGGTTATGCTATCAAGAAAATCGCCACAAAGCCACATGGAAGAACCAACAAGACCAGGAGTACCAGGTAGCAGATATAGAAGACCTCCTGGACATTCTGCTTTGTCTTCTACAGTTAATAGTGGTGCGTCTTATTCTCGATCTTTTGATTCAAGCAACAACAGTACGACGCATACAAACACTGCAACTGGTACAAGTTCAGCTACTGCTGAATTAGATATAAGAGGGAAACGTCCAATGAAGGATTAG 1206 0.4063 MDKSHSFLHSLIKHFKFSSTTEKNNEADLQRMASLEQNIFSYETLVSATKNFNAVHKLGEGGFGPVFKGKLSDGREVAVKKLSHTSNQGKKEFMNEAKLLARVQHKNVVNLLGYCVHGAEKLLVYEYVPHESLDKLLFKSVDKREQLDWKRRFGIITGVAKGLLYLHEDSHHCIIHRDIKASNVLLDDKWTPKIADFGMARLFPEDQSQVNTRVAGTNGYMAPEYMMHGRLSVKADVFSYGVLLLELITGQRNSSFNLDVEHQNLLDWAYKMYKKGRSLEIVDSTLASTVLTEQVAMCIQLALLCTQGDPHLRPTMRRVVVMLSRKSPQSHMEEPTRPGVPGSRYRRPPGHSALSSTVNSGASYSRSFDSSNNSTTHTNTATGTSSATAELDIRGKRPMKD 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g01317 401 SUPERFAMILY Protein kinase-like (PK-like) 37 326 IPR011009 -
Tsu02g01317 401 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 3 380 - -
Tsu02g01317 401 SMART serkin_6 52 330 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu02g01317 401 MobiDBLite consensus disorder prediction 324 401 - -
Tsu02g01317 401 MobiDBLite consensus disorder prediction 350 389 - -
Tsu02g01317 401 ProSiteProfiles Protein kinase domain profile. 52 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu02g01317 401 Pfam Protein tyrosine and serine/threonine kinase 55 322 IPR001245 GO:0004672|GO:0006468
Tsu02g01317 401 PANTHER RECEPTOR-LIKE KINASE 3 380 - -
Tsu02g01317 401 Gene3D Phosphorylase Kinase; domain 1 13 127 - -
Tsu02g01317 401 ProSitePatterns Serine/Threonine protein kinases active-site signature. 174 186 IPR008271 GO:0004672|GO:0006468
Tsu02g01317 401 Gene3D Transferase(Phosphotransferase) domain 1 128 337 - -
Tsu02g01317 401 CDD STKc_IRAK 58 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g01317 Tsu-Chr2 11486550 11489804 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g01317 20 339 Receptor kinase-like Gene Family AT4G11530 50.932 4.62e-110 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Tsu02g01317 PK_Tyr_Ser-Thr 7.3e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g01317 - - gmx:100795769 644.81