Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g01305 ATGATGAACATTGATAACTTCTCACACGACCCTACACCACCTCCAACCACCTTAAACATTCCAAAAAACAACCCACTTCAACAACAAACATCTCTCGAAGGAATCGCCGCTATTGTAGGAGAACAAATCCTCTACGGACCCCACAACACCAAAACGACACAACCTACTTGCGTTTCACAtcacaaaaccaaaacagatcaaacaaaaaacaacgaCACTAACCCAACAAACAAAAACTACAGAGGAGTTAGAAAACGACCGTGGGGAAGATGGTCAGCTGAAATACGTGACAGAATCGGTCGGTGTCGTCATTGGTTAGGAACTTTTGATACTGCTGAAGAAGCGGCGCGTGCTTATGACGCGGCAGCTAGGCGATTGAGAGGTTCTAAAgcaaaaactaattttaaagtACCTTCTGTTTTGCCTATACCGTTATCACCGAACTCGAACGACTCTTGTTCCAGTTCTGATCGTAACGGTAAGAAAAAAGCTGTGCGGAATAGTGGTAGGAAGTGTTGTGTTGTTAGTTCTGTGGGTGAGTTGTTTAGTGGTGTGCCTGAAGTTAGAAGAGAAAGAGATTATGGTAATAATAATGGGATTAATGTTGGATTTGGTGGTGGTAGAAATAGTGCTGGAATGGTTGTGTAG 648 0.4028 MMNIDNFSHDPTPPPTTLNIPKNNPLQQQTSLEGIAAIVGEQILYGPHNTKTTQPTCVSHHKTKTDQTKNNDTNPTNKNYRGVRKRPWGRWSAEIRDRIGRCRHWLGTFDTAEEAARAYDAAARRLRGSKAKTNFKVPSVLPIPLSPNSNDSCSSSDRNGKKKAVRNSGRKCCVVSSVGELFSGVPEVRRERDYGNNNGINVGFGGGRNSAGMVV 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g01305 215 PRINTS Ethylene responsive element binding protein signature 80 91 IPR001471 GO:0003700|GO:0006355
Tsu02g01305 215 PRINTS Ethylene responsive element binding protein signature 102 118 IPR001471 GO:0003700|GO:0006355
Tsu02g01305 215 SMART rav1_2 79 142 IPR001471 GO:0003700|GO:0006355
Tsu02g01305 215 Gene3D AP2/ERF domain 78 137 IPR036955 GO:0003700|GO:0006355
Tsu02g01305 215 Pfam AP2 domain 79 128 IPR001471 GO:0003700|GO:0006355
Tsu02g01305 215 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 27 192 - -
Tsu02g01305 215 SUPERFAMILY DNA-binding domain 79 137 IPR016177 GO:0003677
Tsu02g01305 215 MobiDBLite consensus disorder prediction 51 83 - -
Tsu02g01305 215 MobiDBLite consensus disorder prediction 139 166 - -
Tsu02g01305 215 CDD AP2 78 111 IPR001471 GO:0003700|GO:0006355
Tsu02g01305 215 MobiDBLite consensus disorder prediction 1 23 - -
Tsu02g01305 215 ProSiteProfiles AP2/ERF domain profile. 79 136 IPR001471 GO:0003700|GO:0006355
Tsu02g01305 215 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF084 27 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g01305 Tsu-Chr2 11346398 11347045 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g01305 7 151 AP2-EREBP Transcription Factor Family AT1G80580 52.740 7.92e-30 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tsu02g01305 AP2 1.5e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g01305 - - cam:101490906 246.128