Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g01301 ATGGAGGATTCATGGGAAAATTTTCAGTTTCACAcgGAAATGGAATGTGGTGATGATTATTTGTTGGAAAAGTACAACGCGGTTAACATTGACGGTGACGATTTTCTTAGAGAGATTCTGTTACAGACACCAGAACAGAGTTTAATGTATTCAAAAAGTGAAAACGGTTTTGTTACCGTTAACGTTAACGGCGATGTTGAGGTTATTGAAAACATGGTTAAAAGTAACAGTTCAAATTCAATTGTGTCTCAAGAACAAcaaggtttgaaattgaaagaggTTGTTGTTCCTCGTAGATGTTCTTCACCAACAACATACATTTTGTCTTTTGATAATTCAACTATGATACCAGCTACACCTGAACCTTGTGTTAATTTGGAAGCTGGTAAACGTGATTATTGTTCTAAATCTGATTATTCTAAGAAGAATAAACGGAGTAGTGAAAGTAGTAGTGAAAAAGgtgaaattatgaaaataagtaaaaatcaTGGGGTGAAGAAAGCAAGAAGTGGTTCTCAGTGTATTGATCATGTAATGGCAGAGAGAAAGAGGAGACAAGAATTGACTGAGAGATTCATTGCACTTTCTGCCACCATTCCTGGCTTGAGCaagACGGACAAAGCTTCAATACTCCGAGCAGCAATTGATTATGTGAAACAGCTTCAAGAACGTGTTCATGAACTAGAAGAGAAACAAGACAAAAATGTTGGTGTCAAATCAGTGATGGTCCTCCACAAAATTAATTCATGtggaattaataataatattgaagaTACAAATTCTGGTGACACAAATTGTGATGGTGATTGTAACAACAATGTCCTCCCAGAGATTGAAGTAAGAGTTATGGGAAAAGAAGTGCTTATTGAAATCCATTGTGAGAAACAAAATGGAATTGAGTTCAAATTACTTGACCACATTGAAAATCTTCAACTCTTTGTCACTGGTACCAGTGTGTTGCCTTTTGGAAAATCTGCTATTTCCATTACTATTATTGCTCAGATGGGTGATGGGTACAAAGTGACATTGCATGATCTAGTGAAAAGCATTAGGCAAGTGCTCTTGAAACCTCAAATAAGTTGCGAAAGTGATCCGTACTAG 1101 0.3433 MEDSWENFQFHTEMECGDDYLLEKYNAVNIDGDDFLREILLQTPEQSLMYSKSENGFVTVNVNGDVEVIENMVKSNSSNSIVSQEQQGLKLKEVVVPRRCSSPTTYILSFDNSTMIPATPEPCVNLEAGKRDYCSKSDYSKKNKRSSESSSEKGEIMKISKNHGVKKARSGSQCIDHVMAERKRRQELTERFIALSATIPGLSKTDKASILRAAIDYVKQLQERVHELEEKQDKNVGVKSVMVLHKINSCGINNNIEDTNSGDTNCDGDCNNNVLPEIEVRVMGKEVLIEIHCEKQNGIEFKLLDHIENLQLFVTGTSVLPFGKSAISITIIAQMGDGYKVTLHDLVKSIRQVLLKPQISCESDPY 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g01301 366 SMART finulus 178 227 IPR011598 GO:0046983
Tsu02g01301 366 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 176 233 IPR036638 GO:0046983
Tsu02g01301 366 Gene3D - 162 235 IPR036638 GO:0046983
Tsu02g01301 366 Pfam Helix-loop-helix DNA-binding domain 175 222 IPR011598 GO:0046983
Tsu02g01301 366 PANTHER BHLH TRANSCRIPTION FACTOR 1 358 - -
Tsu02g01301 366 Coils Coil 211 231 - -
Tsu02g01301 366 MobiDBLite consensus disorder prediction 135 157 - -
Tsu02g01301 366 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 1 358 - -
Tsu02g01301 366 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 172 221 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g01301 Tsu-Chr2 11308203 11316438 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g01301 164 354 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 46.154 1.82e-42 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tsu02g01301 HLH 2e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g01301 - - mtr:MTR_4g009540 451.44