Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g01281 atgaagagagaGCATAAACAAGAACACGAAGATGCTACTATGAGTAGTAAATCAGAGATTTGTTGGGAAGACGACGGTGGTATGGATGAACTCTTAGCTGTTGTTGGTTACAAAGTGAAATCATCAGACATGGCTGAAGTTGCTCAAAAGCTTGAACAACTTGAACAAGCTATGAACGGTGGTAATTTTCAAGACCAAGATGAATCAACAATCGCTCAACAACTCTCAAACGACACCGTTCATTACAATCCTTCTGATATTTCCAACTGGCTTCAAACTATGCTTTCCAATTTTGACCCTCAACCTAATCCAACCGTTTCATCTTCCTCCGATAATGATCTCAACGCCATTCCCGGTAAAGCGATTTACGCCAACACTGTTGTACCTGTCTCAcaagatgatgataatgataatcaTTTTCCTTCTCCGAAACGAGTTAAACGAAGTGACTCTACTGAGTCAACTCGTCCTGTTGTAATGGTAGTTGAAACACAAGAAAAAGGGATTCGTCTTGTTCATACTTTAATGGCTTGTGCTGAAGCAGTTGAACAAAACAATCTAACCGTAGCAGAAGCTTTGGTGAAACAGATCGGTTACTTAGCTGTATCACAAGAAGGTGCTATGAGAAAAGTTGCTACCTATTTCGCTGAAGGTTTAGCTAGAAGAATCTACGGTGTGTTTCCACAGCATTCCGTTTCCGATTCGCTTCAGATCCATTTCTATGAAACTTGTCCTTATCTTAAATTCGCTCATTTCACAGCGAATCAAGCTATTCTTGAAGCTTTTCAAGGAAAATCTAGGGTTCATGTTATTGATTTCTCGATCAATCAAGGGATGCAGTGGCCGGCGCTTATGCAGGCTCTTGCCTTACGTCCTGGTGGTCCACCTGCTTTTCGTCTCACCGGAATTGGTCCTCCGGCGTCTGATAACTCCGATCATCTTCAACAGGTTGGTTGGAGACTTGCTCAATTTGCTCAAACGATTCATGTTCAGTTTGAGTATCGTGGTTTTGTTGCTAATAGTCTTGCTGATTTAGATGCTTCTATGCTTGAACTCCGTTCACCGGAAACTGAATCTGTTGCTGTTAACTCTGTTTTTGAGCTTCATAAACTCAACGCGCGTCCAGGTGCGCTTGAGAAAGTTTTTTCTGTTATCCGTCAGATTCGGCCGGAGATTGTAACCGTTGTTGAACAAGAAGGGAATCATAACGGACCGGCTTTTCTAGACCGGTTTACTGAGTCACTTCATTATTACTCGACTCTGTTTGACTCGCTTGAAGGTTCATTAGTTGAACCACAAGACAAGGCTATGTCGGAGGTTTATTTAGGGAAACAAATCTGTAACGTGGTGGCGTGTGAAGGAACGGACCGGGTTGAACGTCATGAGACTTTGAACCAGTGGAGGAACCGGTTCGGTTCAGCTGGATTTTCTCCGGTTCATTTGGGTTCTAATGCTTTTAAGCAAGCGAGTATGTTGTTAGCACTTTTCGCCGGTGGGGAAGGTTACAAGGTGGAAGAGAATGATGGGTGTCTTATGCTTGGTTGGCACACTAGACCTTTGATTGCTACCTCTGCTTGGAAACTCGCCGCCGCTAACTCAGTTGTGGTTTCACACTGA 1617 0.4261 MKREHKQEHEDATMSSKSEICWEDDGGMDELLAVVGYKVKSSDMAEVAQKLEQLEQAMNGGNFQDQDESTIAQQLSNDTVHYNPSDISNWLQTMLSNFDPQPNPTVSSSSDNDLNAIPGKAIYANTVVPVSQDDDNDNHFPSPKRVKRSDSTESTRPVVMVVETQEKGIRLVHTLMACAEAVEQNNLTVAEALVKQIGYLAVSQEGAMRKVATYFAEGLARRIYGVFPQHSVSDSLQIHFYETCPYLKFAHFTANQAILEAFQGKSRVHVIDFSINQGMQWPALMQALALRPGGPPAFRLTGIGPPASDNSDHLQQVGWRLAQFAQTIHVQFEYRGFVANSLADLDASMLELRSPETESVAVNSVFELHKLNARPGALEKVFSVIRQIRPEIVTVVEQEGNHNGPAFLDRFTESLHYYSTLFDSLEGSLVEPQDKAMSEVYLGKQICNVVACEGTDRVERHETLNQWRNRFGSAGFSPVHLGSNAFKQASMLLALFAGGEGYKVEENDGCLMLGWHTRPLIATSAWKLAAANSVVVSH 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g01281 538 Gene3D - 27 98 IPR038088 -
Tsu02g01281 538 MobiDBLite consensus disorder prediction 128 155 - -
Tsu02g01281 538 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 155 528 IPR005202 -
Tsu02g01281 538 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 13 122 IPR005202 -
Tsu02g01281 538 Coils Coil 37 57 - -
Tsu02g01281 538 MobiDBLite consensus disorder prediction 1 21 - -
Tsu02g01281 538 Pfam GRAS domain family 171 527 IPR005202 -
Tsu02g01281 538 PANTHER DELLA PROTEIN GAI1-RELATED 13 122 IPR030006 GO:0003712|GO:0005634
Tsu02g01281 538 PANTHER DELLA PROTEIN GAI1-RELATED 155 528 IPR030006 GO:0003712|GO:0005634
Tsu02g01281 538 Pfam Transcriptional regulator DELLA protein N terminal 29 102 IPR021914 -
Tsu02g01281 538 ProSiteProfiles GRAS family profile. 162 527 IPR005202 -
Tsu02g01281 538 MobiDBLite consensus disorder prediction 137 152 - -
Tsu02g01281 538 SMART DELLA_2 29 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g01281 Tsu-Chr2 10990338 10992947 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g01281 23 529 GRAS Transcription Factor Family AT1G14920 70.038 0.0 724
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Tsu02g01281 GRAS 1e-136 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g01281 K14494 - gmx:547718 790.801
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g01281 02 10990338 10992947 Tsu02g01281 02 10990338 10992947 ECH