Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g01251 ATGGGTGAAGAAAAGCAACACAGTATTCCCGCTTTGCCATGGATGCGAGACCCTGTCGACATCACTCTCTCTCAACAACTTCCGCTACATTCCGTTCCTTCTCTCCACCCCAAGTTGAAGGTAGCACTGGAGGACATGGGAATCTCAAACCTATTCCCAGTGCAAGTCGCAGTTTGGCATGAAACGGTTGGCCCTGGCAATTTTGAGCGAGACATTTGTGTTAACTCACCCACTGGAAGCGGCAAAACCCTCGCCTATGCTCTCCCCTTAGTGCAGATGCTATCAGGTCGCATCACTAGCTGCCTCCGCGCGTTGGTTGTGGTCCCCACCCGCGACCTTGCTTTGCAGGTCAAACAAGTCTTTGACGCCATTGCATCTCCATTAGGCCTGCGCGTTGGCTTGGCCATCGGTCAATCATCCTTAGCTGACGAGATTTCCGAGCTCGTTGAAATGCCGGCACATGATATAAGCACCTACTATGATCCGCATCACGTTTCACTTCCTCGCTTTCAGAGTAAGGTTGACATATTGGTAGCAACCCCTGGCAGGCTTATGGATCACATTAATACTACCAAAGGCTTCACACTTGAGCATCTTTATTATCTTGTGGTTGATGAAACAGATCGATTGCTTCGTGAGGCATACCAATCATGGTTGCCTACTGTGCTTGAACTGATCCAATCTAATGATGGTGGTTTTTTCCAACCGGCTGATTCTTTTTTTCCCTGTTCTGTTGGCGAATTAAGAACCAGAAGAAGATGCGGAGTTGAGAGGGGATTCAAGGACAAGCCTTATCCCAGGCTGGCAAAAATGGTTCTATCTGCGACATTAACTCAGGATCCAGGCAGGATTATTCAGCTTAATTTGCATCACCCTTTATTATTGAAATCTGGACAAATGCGTTATCGGTTCCCAGAAAATTTGGAATCATATAAACTGattTGTGATAAAAATGTGAAACCCTTGTACTTAATTGCCCTTTTGAAATCTCTGGGAGAAGAAAAATGCCTAGTTTTTACAAAATCTGTGGATTCAACACACCGTCTCTGCAAATTACTGAATTGTTTTGAAGATCTGCAAATTGATATCAAGGAGTATTCTAGTCTCCAACATCAACGTGTAAGAAGCAAGACATTGAATGAATTTCGGAAGGGGGTGTTTCAAGTGCTTGTATCTTCTGATGCGCTGACTCGTGGAATGGATGTTGAAGGGGTAAGAAATGTCATTAATTATGATGTGCccaaatacataaaaacttatgtTCATCGGGCTGGTAGGACTGCAAGAGCAGGCCAGACTGGGCGTTGCTTCACATTGATGGCAGACGATGAGGTTCGACGATTTAAGAAGTTGATGCGAAAGGCTGAGGGTGGTTCTTGTCTTGAGCATAACATTTCATCCAGCCTAATTGAAGCACTCAATACTTCCTACCAATCAGCACTGACAAAATATAAGGAAATAATTTCAAAGACACGAAAGAAACCCAAGTTGAGCAgggaatga 1503 0.4391 MGEEKQHSIPALPWMRDPVDITLSQQLPLHSVPSLHPKLKVALEDMGISNLFPVQVAVWHETVGPGNFERDICVNSPTGSGKTLAYALPLVQMLSGRITSCLRALVVVPTRDLALQVKQVFDAIASPLGLRVGLAIGQSSLADEISELVEMPAHDISTYYDPHHVSLPRFQSKVDILVATPGRLMDHINTTKGFTLEHLYYLVVDETDRLLREAYQSWLPTVLELIQSNDGGFFQPADSFFPCSVGELRTRRRCGVERGFKDKPYPRLAKMVLSATLTQDPGRIIQLNLHHPLLLKSGQMRYRFPENLESYKLICDKNVKPLYLIALLKSLGEEKCLVFTKSVDSTHRLCKLLNCFEDLQIDIKEYSSLQHQRVRSKTLNEFRKGVFQVLVSSDALTRGMDVEGVRNVINYDVPKYIKTYVHRAGRTARAGQTGRCFTLMADDEVRRFKKLMRKAEGGSCLEHNISSSLIEALNTSYQSALTKYKEIISKTRKKPKLSRE 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g01251 500 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 103 452 IPR027417 -
Tsu02g01251 500 PANTHER ATP-DEPENDENT RNA HELICASE DDX51 28 476 - -
Tsu02g01251 500 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 63 295 IPR014001 -
Tsu02g01251 500 CDD SF2_C_DEAD 308 439 - -
Tsu02g01251 500 Gene3D - 19 298 IPR027417 -
Tsu02g01251 500 SMART ultradead3 47 311 IPR014001 -
Tsu02g01251 500 Pfam Helicase conserved C-terminal domain 320 431 IPR001650 -
Tsu02g01251 500 PANTHER RNA HELICASE 28 476 - -
Tsu02g01251 500 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 323 477 IPR001650 -
Tsu02g01251 500 Gene3D - 306 499 IPR027417 -
Tsu02g01251 500 SMART helicmild6 347 431 IPR001650 -
Tsu02g01251 500 CDD DEADc_DDX51 39 295 - -
Tsu02g01251 500 Pfam DEAD/DEAH box helicase 53 281 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g01251 Tsu-Chr2 10680543 10687754 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g01251 71 453 Eukaryotic Initiation Factors Gene Family AT1G72730 23.575 1.43e-24 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g01251 K14807 - tcc:18596452 675.241
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g01251 02 10680543 10687754 Tsu02g01251 02 10680543 10687754 ECH