Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g01247 ATGGCGAAAATTGGGAAAAAGTTTACAAATTTGTGCGACATTTCACCTGAGAAGAAGGAAGGAATACGTATTAAGGTTCGGGTGTCGCGCTTGTGGAAAGTCTCAGCTTTCCTAAATCCTTCAGAGACCAGTTCAATTCAAATGGTTCTTTTGGATGATAAGGGAGGTAAAATCCATGCTTCAATCCGCAAGCAATTGGTATATATGTTTGATACAAAGATTGAAGAAGGAGGGGTGTATGAGATGTCATTATTCGATGTTTCTCCTCAAATTGGTTTCTATAGGACAACTCTTCATCCTTACAAGCtgaattttcaaattaaaacaaaGGTTCAAGCTTCCAATTGTTCAGATATATCTCTCTATGGTTTGACATTCACAAGTTTGGAGGAAGTTTGTGGACATTTACGCGATTATGAATTTTTAGTTGatgtaaTTGGTATAATGACTGGAATTTCTGCTGAAAGTGAGTTTGTTAGGGATGGTAAGATAACAAAAAGGGTTGTCATTGAACTTACTGATTCAAGTGGGAAATGTGAATGTGCTCTTTTTGGAGactatgttgatgatttgaacaagaagatggggAAATCTCATGAAGGGCTTCCCGTTGTTGTTATCCAATTTGCCAAAGTCAAAATCTTTAGAGACAAAGCTTCAATCCAAAATGACTTTAGCGCTACTCGCATTTTCATCAACCCAGACATTGTTGAGGCTGAAACTTTTAAGAATGGTGGTAGTGCAAAACCTCCACTTGATGAAGAGTTTCTACGGATGcatcctaaaaagaaaatagGCGAGCTGTTGGACTTGGAGGAAGATGGGATATTTGCTGTGTACGGATCTGTGACTGGAATTGTTGGCGGTGAGAAATGGTGGTACCCGGCCTACAAGTGCTATAGAGCTGTTGTGCCTGATTCTGGTGCTTACTATTGCACTAGCTGTGTGAAACATATATTTCAATTTGTTCCTAGGTTCAAGGTCAAGATTGAAGTGAGTGATGGTGATTCTACTGCTGTATTCATTCTCTTTGATTTTGAAATGAGTTATTTGATGGAGAAGTCGTGTGCTTACTTTGTTGCACAAAAAAAgGCGTCAAATGAAGGTGTCTATCCCATTGAGTTTGATTTCCTGGTTGGGCCCATATGTTACTCCTGGCAAGGTTTGAACCTCAATGAATCTGTCAATGTTATCTAA 1197 0.3693 MAKIGKKFTNLCDISPEKKEGIRIKVRVSRLWKVSAFLNPSETSSIQMVLLDDKGGKIHASIRKQLVYMFDTKIEEGGVYEMSLFDVSPQIGFYRTTLHPYKLNFQIKTKVQASNCSDISLYGLTFTSLEEVCGHLRDYEFLVDVIGIMTGISAESEFVRDGKITKRVVIELTDSSGKCECALFGDYVDDLNKKMGKSHEGLPVVVIQFAKVKIFRDKASIQNDFSATRIFINPDIVEAETFKNGGSAKPPLDEEFLRMHPKKKIGELLDLEEDGIFAVYGSVTGIVGGEKWWYPAYKCYRAVVPDSGAYYCTSCVKHIFQFVPRFKVKIEVSDGDSTAVFILFDFEMSYLMEKSCAYFVAQKKASNEGVYPIEFDFLVGPICYSWQGLNLNESVNVI 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g01247 398 CDD RPA1_DBD_B_like 144 243 - -
Tsu02g01247 398 SUPERFAMILY Nucleic acid-binding proteins 125 244 IPR012340 -
Tsu02g01247 398 Gene3D - 5 114 IPR012340 -
Tsu02g01247 398 SUPERFAMILY Nucleic acid-binding proteins 265 372 IPR012340 -
Tsu02g01247 398 CDD RPA1_DBD_A_like 23 111 - -
Tsu02g01247 398 PANTHER REPLICATION FACTOR A 1, RFA1 22 360 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Tsu02g01247 398 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 22 360 - -
Tsu02g01247 398 Gene3D - 254 383 IPR012340 -
Tsu02g01247 398 Pfam Domain of unknown function DUF223 48 125 IPR003871 -
Tsu02g01247 398 SUPERFAMILY Nucleic acid-binding proteins 7 113 IPR012340 -
Tsu02g01247 398 Gene3D - 117 249 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g01247 Tsu-Chr2 10619868 10624285 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g01247 24 244 Core DNA Replication Machinery Family AT4G19130 24.359 4.42e-11 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g01247 - - mtr:MTR_8g062030 402.905