Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g01243 ATGAAACTTTCTTCAGCTGGGTTTAGTCCTCCACCTGAGGAAGGAGAAAAACGGGTTCTAGATTCGGAACTTTGGCATGCTTGTGCCGGTCCTCTTGTTTCTTTGCCGGCTGATGGAAGCCGCGTGGTGTACTTTCCACAAGGTCACAGTGAACAGGTTGCTGTATCTACCAACAGGGAAGTTGATACTTATATCCCGAATCCAAGTTTACCTCCCCAACTTATTTGTCAACTTCATAATTTGACTATGCATGCAGATACGGAGACAGATGAAGTGTATGCACAGATGACCTTGCAGCCGCTAAATCCCGAAGAGCAAAAGGAGGCATATCATCCTGCAGAGTTGGGAACTGCAAACAAACAGCCAACAAACTACTTCTGCAAAATTTTGACAGCCAGTGATACTAGTACTCATGGTGGATTCTCTGTTCCTCGCCGGGCAGCTGAAAAAGTTTTTCCTCCACTGGACTTTTCACAACAGCCTCCTGCTCAAGAGTTGATTGCAAGGGATTTGCATGGTAATGACTGGAAATTCAAACATATCTTCCGAGGCCAGCCCAAAAGGCATTTACTTACAACAGGGTGGAGTGTCTTTGTGAGTGCTAAAAGACTTGTTGCTGGTGATTCAGTGCTGTTTATATGgaatgaaaaaaatcaattgctTCTTGGCATTCGGCGTGCTAATCGACCCCAACATATGATGCCTTCATCAGTGTTGTCAAGTGATAGCATGCACTTGGGGTTACTGGCTGCTGCAGCTCATGCTGCTGCAACGAACAGTCGTTTCACCATTTTCTATAATCCACGtGCTAGCCCATCTGAATTTGTCATACCCCTAGCAAAGTATGTTAAAGCTGTATATCATACCCGAGTTTCGGTTGGTATGCGCTTCAGGATGCTTTTTGAAACAGAGGAATCTAGTGTTCGGCGATACATGGGAACAATAACTGGCATCAGTGACCTGGATTCTGTCCGGTGGCCAAATTCACATTGGCGTTCAGTAAAGGTTGGCTGGGACGAATCCACTGCAGGTGAGAGGCAACCTAGAGTGTCTCTATGGGAAATTGAGCCACTAACAACATTTCCGATGTATCCATCTCCATTTCCCCTTAGGCTTAAAAGACCATGGCCTCCAGGATTGCCTGCATTCCATGCAGGCTTGAAGGATGATGATTTTGGCATGAATTCTCCATTATTGTGGCTTCGAGATGCAGATAGAGGGCTTCAGACTCTTAATTTTCAAGGGATGGGTGTTAATCCTTGGATGCAGGCGAGGCTCGATCCGTCCATGATGAATATGCAACCAGACATGTACCAAGCTATGGCAGCTGCTGCACTTCAGGATATGAGGACTTTAGATCCTTCTAAACAGCATCCTGCCTCCTTACTTCAATTTCAGCAGCCACAGAATTTCACCAATGGTACTGCTGCTTTAATGCAAAACCAGATGTTGCAGCAATCTCAACCTCAGCAGGCTTTTTCAAAGAATCAAGAAAGTCAGCTTCCATCTCAATCTCAGGCTCAAACACAAAATTTTCAGCAGCTTCTTCAGAATCAGCACTCCTTCACTAATCAAAATTATCATCATCTGCAGCAACAACAactacaacaacaacatcagcaacagcagcagcagcagcagcagcagcaacaacaacaacaacaacaacagcaacaacagcagcaacaacagcaacaacaacagcagcagcagcagcagcagcaacaagtTGTAGATCGTCAGCAAATTTCAAATGCTGTGTCTACAATGTCCCAGTTTGTTTCGGCACCGCAATCTCAATCAATGCAGCCCATGCAAGCCATCTCTTCAATTGGAAATCAGCAACATTTTTCTGATTCAAATGGGAACCCTGCAACTACTGCTACCGTTTCTCCTTTGCACAATATGTTAGGTTCATTTCCCAACGACGAAACATCTCACCTTCTCAACCTTCCTAGACAAAACTCTTGGGTTCCTGTTCAATCTTCAACTGCATGGCCCTCGAAGCGCATTGCAGTTGATCCTCTCCTTTCTTCCGGAGCATCTAATTATGTTCTTCCTCAGGTGGAGCAGTTAGGGCAGTTACAGACTACCATATCTCAAAATGTTATTACCTTGCCCCCATTTCCTGGTAGGGAGTGTACAATAGAAGGGAACACCGATCCACAAAACCATCTGTTGTTTGGTTTTAACATAGAGCCCTCATCACATCTAGTTTATAATGAGATGTCAAACCTTAAGAGGGTCAATAGCAACTGTGACTCATCAGCTGTACCTTTTCAATCTTCTACGTACCTGAATACCACGGGTGCCGATTCTTCATTGAATCCTGGAATGACACACAGCATTGGTGAGTCGGGCTTCCTGCAAACTCCAGAAAATGGAAGTCAAGGGAACCCACCAAACAAAACCTTTGTGAAGGTTTATAAGTCAGGGTCCTTCGGAAGATCGTTGGATATCACTAAATTCTCTAACTACCCCGAGCTACGCAGTGAGCTTGCTCGTATGTTTGGGCTTGAAGGTGAGTTGGAGGACCCTGTAAGATCAGGCTGGCAGCTTGTATTTGTTGATCAGGAGAATGATGTTCTTCTCCTCGGTGATGGTCCATGGCCGGAATTTGTAAATAGTGTATGGTGTATCAAGATACTTTCCCCTCAAGAAGTGCAGCAAATGGGGAACAATGGTCTAGAGCTTCTGAACTCAGCTCCAACTCAGAGACTCTCCAATGGAATCTGTGATGACTACACCGGCCGTGAGGACTCAAATTTAAGCACCGGGTTAACAACTGTGGGGTCTTTAGACTACTGA 2808 0.4266 MKLSSAGFSPPPEEGEKRVLDSELWHACAGPLVSLPADGSRVVYFPQGHSEQVAVSTNREVDTYIPNPSLPPQLICQLHNLTMHADTETDEVYAQMTLQPLNPEEQKEAYHPAELGTANKQPTNYFCKILTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHGNDWKFKHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQHMMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDSVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPPGLPAFHAGLKDDDFGMNSPLLWLRDADRGLQTLNFQGMGVNPWMQARLDPSMMNMQPDMYQAMAAAALQDMRTLDPSKQHPASLLQFQQPQNFTNGTAALMQNQMLQQSQPQQAFSKNQESQLPSQSQAQTQNFQQLLQNQHSFTNQNYHHLQQQQLQQQHQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQVVDRQQISNAVSTMSQFVSAPQSQSMQPMQAISSIGNQQHFSDSNGNPATTATVSPLHNMLGSFPNDETSHLLNLPRQNSWVPVQSSTAWPSKRIAVDPLLSSGASNYVLPQVEQLGQLQTTISQNVITLPPFPGRECTIEGNTDPQNHLLFGFNIEPSSHLVYNEMSNLKRVNSNCDSSAVPFQSSTYLNTTGADSSLNPGMTHSIGESGFLQTPENGSQGNPPNKTFVKVYKSGSFGRSLDITKFSNYPELRSELARMFGLEGELEDPVRSGWQLVFVDQENDVLLLGDGPWPEFVNSVWCIKILSPQEVQQMGNNGLELLNSAPTQRLSNGICDDYTGREDSNLSTGLTTVGSLDY 935
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g01243 935 CDD B3_DNA 125 226 IPR003340 GO:0003677
Tsu02g01243 935 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 553 IPR044835 GO:0003677|GO:0006355|GO:0009725
Tsu02g01243 935 ProSiteProfiles B3 DNA-binding domain profile. 126 228 IPR003340 GO:0003677
Tsu02g01243 935 SUPERFAMILY CAD & PB1 domains 795 878 - -
Tsu02g01243 935 Coils Coil 530 576 - -
Tsu02g01243 935 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 546 916 IPR044835 GO:0003677|GO:0006355|GO:0009725
Tsu02g01243 935 Pfam B3 DNA binding domain 126 227 IPR003340 GO:0003677
Tsu02g01243 935 MobiDBLite consensus disorder prediction 771 802 - -
Tsu02g01243 935 Gene3D - 800 892 - -
Tsu02g01243 935 Gene3D - 124 227 IPR015300 -
Tsu02g01243 935 Pfam Auxin response factor 252 335 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Tsu02g01243 935 PANTHER AUXIN RESPONSE FACTOR 546 916 - -
Tsu02g01243 935 PANTHER AUXIN RESPONSE FACTOR 1 553 - -
Tsu02g01243 935 SUPERFAMILY DNA-binding pseudobarrel domain 111 255 IPR015300 -
Tsu02g01243 935 MobiDBLite consensus disorder prediction 483 508 - -
Tsu02g01243 935 SMART B3_2 126 228 IPR003340 GO:0003677
Tsu02g01243 935 ProSiteProfiles PB1 domain profile. 803 887 IPR000270 GO:0005515
Tsu02g01243 935 Gene3D - 290 362 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g01243 Tsu-Chr2 10575616 10580782 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g01243 1 483 B3 DNA Binding Superfamily AT1G30330 84.049 0.0 822
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Tsu02g01243 B3 6.3e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g01243 - - gmx:100777789 1481.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g01243 02 10575616 10580782 Tsu02g01243 02 10575616 10580782 ECH