Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g01240 ATGGGCCGTCGTAAAATTGAGATTGAGATTGTGAAAGATCCCAACACGAGACAGGTTACATTCTCAAAACGTCGAACAGGCTTATTCAAGAAAGCAAATGAATTGTCTATTTTGTGTGGAGCAGAAGTTGCTATTGTTGTGTTTTCTCCGGGGAACAAGCCTTACTCTTTTGGTCACCCAGGAGTTGATGTTGTTGCGGCCAAGTATCTTCAACAAGATCCTGAACCAAGTGACTCACAAGGAGACCCCTCTTCTGATGCTTCCAATATGGACAAGTTGAATCTGGAACTTGCGGAGGTGTTGGCTGAAATTCGTGAAGGTGAAAAGGAGGTTGAGACTTATGATGAGATCTTGAAGcaaaatgatgtgacaacactcTCTGAGCTTGAAGAATTGAGAAATTCATTCAAAGAGCTTCAAGATCGAGTAAAATTGTATCTTAGTGATATAGAGATATCAGAATATATGATGTTGCTTGCTAAGGAGCCAGTGAAACTTACAAAGTCTTATTCTCTTAGTTGGCTTCCATTGTTGCTGATTCTACTAACAACTCTTTCAGTTAATGGTGTTGAACAAAAGAACTTTTACATTGTTTTCTTAGGAGCTTATCCTGTTAGTAGAGAAGAAGCAGTAGAGAGTCATATAAATATTCTCTCTTCTGTTAAACTAAGCCATGTTGAAGCCAAAGAATCCATAGTATACAGCTACACAAAGAGCTTTAATGCATTTGCTGCTAAACTATCTAAGGATGAAGCCAACAAGTTATCTGCCATGAATGAAGTGCTCTCAGTACTTCCCAATCAGTATCGCAAGCTTCACACAACAAGATCATGGGACTTCATTGGATTACCTTTGACAGTTAAGAGAAAACTGAAACAAGAGAGTGACACAATTGTGGCTCTTATGGATACAGGGATCACTCCTGAGTTTCGAAGCTTCAACGACGATGGATTTGGTCCTCCGCCCTCCAAATGGAAAGGAACTTGTGacaaatttgttaatttctCAGGCTGCAATAACAAGATAATTGGAGCCAAATACTTCAAACTTGATGGAAGATCGGAACAATCTGATATATTATCTCCCATAGATGTGTCAGGACATGGGACTCATACAGCATCAACAGCAGCAGGTAGTCTCGTCCCAAATGCGAGTCTCTTTGGATTAGCAAACGGGACTGCTCGCGGGGCAGTACCTTCGGCAAGGTTAGCAATTTACAAAGTTTGCTGGAAAGAGGATGGATGTGCTGATATGGATGTACTTGCTGCATTTGAGGCTGCTATACATGATGGTGTGGATGTCATATCCATTTCCTTAGGTGGAGAAGATTCAGATTATATGAAGGACCCTATATCGATTGGTGCGTTTCATGCCATGAGGAAAGGCTTAATCACTGTCGCCTCAGCTGGAAATGATGGTCCAACTATGGCAACTGTCGTAAATAATGCACCGTGGGTTGTCACGGTAGCTGCTAGTGGCATCGATAGGGACTTCCATAGTACTGTAGAGTTGGGGACTAGAACAAATGTTTCTGGAGAAGGAATAAACATCTTTAGTCCAAAGCAAAAACAGTATCCCCTTGTTAACGGGATGGATGCGGTGCGAGCCTCTTCAAGCAAGGAAAATGCTAAGTTCTGCGCCAAAGGCTCCTTAGAACCAAATAAAGTGAAAGGAAAGATTGTATACTGTAAATTTAGAACATGGAGCACTGAAGCTGTTGTGAAAGCAATAGGAGGCATTGGTACTATAGTTGaatatgatgaatttgaagatgttCCTGAAACATTCATGGCTCCTGCTACATTTGTGAATCAAAGCGCAGGtcaaattattacaaattataTGCAATCTACAAGATCACCATCAGCAGTGATACATAAGAGCCATGAAGTGAAAATAGCAGCTCCATTTGTTGCTTCTTTTTCATCTAGGGGTCCAAATTTAGGATCTCAACATGTTCTCAAGCCTGATATAACAGCTCCTGGCATTAGCATTTTGGCAGCATATACACTCAGGCAATCAATTGCTAGTTTAGGAGGGGACACTCAATTTTCAGAATTTACACTAATGTCTGGTACTTCTATGTCATGCCCTCATGTTTCTGGAATAGCAGCATATGTAAAGTCATTTCATCCAAATTGGACTCCTGCTGCAATCAGATCAGCTATAATGACCACAGCTAAACCTATGAGCCAGAAATTCAACAAGGAAGCAGAATTTGCTTTTGGTGCTGGTCAAGTTAATCCAACAAAAGCTCTAAATCCTGGCTTAATCTATGACATGGATGAACTTGGTTATATTCAGTTCTTATGCCATGAGGGATATAATGGTACCACTTTATCAATATTAATTGGTTCTCCTATAAATTGCACTTCTTTGCTTCCTGGATTTGGTCATGATGCTATTAACTATCCAAGCATGCAACTAAGTATGAAAAACAACACAGAAACAACAATAGGAGTTTTCATGAGAACAGTTACAAATGTAGGTCCTGGATCAACTATGTATAATGCTACTATTAAATCTCCAAAAGGAGCGGAAATTACAGTGAAACCTACTAGCCTCATTTTCTCTCATACCCTACAAAAGAAGAGTTTTAAGGTGGTGGTGAAAGCAAAGTCTATAAACATGAAAATTTTATCAGGTTCACTTATTTGGAGAAATCCTCGTTACATTGTTAGAAGTCCTATTGTAATCTATAATCCATAA 2709 0.3894 MGRRKIEIEIVKDPNTRQVTFSKRRTGLFKKANELSILCGAEVAIVVFSPGNKPYSFGHPGVDVVAAKYLQQDPEPSDSQGDPSSDASNMDKLNLELAEVLAEIREGEKEVETYDEILKQNDVTTLSELEELRNSFKELQDRVKLYLSDIEISEYMMLLAKEPVKLTKSYSLSWLPLLLILLTTLSVNGVEQKNFYIVFLGAYPVSREEAVESHINILSSVKLSHVEAKESIVYSYTKSFNAFAAKLSKDEANKLSAMNEVLSVLPNQYRKLHTTRSWDFIGLPLTVKRKLKQESDTIVALMDTGITPEFRSFNDDGFGPPPSKWKGTCDKFVNFSGCNNKIIGAKYFKLDGRSEQSDILSPIDVSGHGTHTASTAAGSLVPNASLFGLANGTARGAVPSARLAIYKVCWKEDGCADMDVLAAFEAAIHDGVDVISISLGGEDSDYMKDPISIGAFHAMRKGLITVASAGNDGPTMATVVNNAPWVVTVAASGIDRDFHSTVELGTRTNVSGEGINIFSPKQKQYPLVNGMDAVRASSSKENAKFCAKGSLEPNKVKGKIVYCKFRTWSTEAVVKAIGGIGTIVEYDEFEDVPETFMAPATFVNQSAGQIITNYMQSTRSPSAVIHKSHEVKIAAPFVASFSSRGPNLGSQHVLKPDITAPGISILAAYTLRQSIASLGGDTQFSEFTLMSGTSMSCPHVSGIAAYVKSFHPNWTPAAIRSAIMTTAKPMSQKFNKEAEFAFGAGQVNPTKALNPGLIYDMDELGYIQFLCHEGYNGTTLSILIGSPINCTSLLPGFGHDAINYPSMQLSMKNNTETTIGVFMRTVTNVGPGSTMYNATIKSPKGAEITVKPTSLIFSHTLQKKSFKVVVKAKSINMKILSGSLIWRNPRYIVRSPIVIYNP 902
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g01240 902 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Tsu02g01240 902 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Tsu02g01240 902 SUPERFAMILY Subtilisin-like 272 757 IPR036852 GO:0004252|GO:0006508
Tsu02g01240 902 Gene3D - 770 901 - -
Tsu02g01240 902 Pfam Peptidase inhibitor I9 196 273 IPR010259 -
Tsu02g01240 902 PANTHER SUBTILISIN-LIKE PROTEASE SBT4.14 195 900 - -
Tsu02g01240 902 CDD PA_subtilisin_like 501 625 - -
Tsu02g01240 902 Gene3D Peptidase S8/S53 domain 296 764 IPR036852 GO:0004252|GO:0006508
Tsu02g01240 902 Pfam Subtilase family 295 745 IPR000209 GO:0006508|GO:0008236
Tsu02g01240 902 CDD Peptidases_S8_3 271 727 IPR034197 -
Tsu02g01240 902 Coils Coil 129 149 - -
Tsu02g01240 902 Gene3D - 495 631 - -
Tsu02g01240 902 PRINTS Subtilisin serine protease family (S8) signature 691 707 IPR015500 -
Tsu02g01240 902 PRINTS Subtilisin serine protease family (S8) signature 364 377 IPR015500 -
Tsu02g01240 902 PRINTS Subtilisin serine protease family (S8) signature 294 313 IPR015500 -
Tsu02g01240 902 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Tsu02g01240 902 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Tsu02g01240 902 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Tsu02g01240 902 Pfam Fibronectin type-III domain 802 899 IPR041469 -
Tsu02g01240 902 ProSitePatterns Serine proteases, subtilase family, serine active site. 692 702 IPR023828 -
Tsu02g01240 902 CDD MADS_MEF2_like 2 71 IPR033896 GO:0000977|GO:0045944
Tsu02g01240 902 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 195 900 IPR045051 -
Tsu02g01240 902 SUPERFAMILY SRF-like 1 73 IPR036879 GO:0003677|GO:0046983
Tsu02g01240 902 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 184 273 IPR037045 -
Tsu02g01240 902 Gene3D - 14 80 IPR036879 GO:0003677|GO:0046983
Tsu02g01240 902 Coils Coil 90 110 - -
Tsu02g01240 902 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 57 IPR002100 GO:0003677|GO:0046983
Tsu02g01240 902 ProSiteProfiles Serine proteases, subtilase domain profile. 277 753 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g01240 Tsu-Chr2 10530024 10537600 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g01240 193 727 Subtilisin-like Serine Gene Family AT4G00230 62.991 0.0 705
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Tsu02g01240 Peptidase_S8 1.4e-48 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g01240 - - ccaj:109800351 1180.62