Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g01238 ATGGTACACAACAGGTCTATTCTCTCTCACAATATAGACAATGGTTGCTTTCCATCTCCACACCTTGATGCTTTTCCAGCTGGTTTACGAGTTTTAGTCGTCGATGATGATCCAACATGGCTTAGAATCCTTGAAAAAATGCTCAAAAAGTGCTTTTACCAAGTGACTACATGTTGTTTAGCAATAGAGGCTCTTAAGAAGCTTCGCGAAAAGAAAGATGCATATGACATAGTTATCAGTGATGTAAACATGCCTGACATGGATGGTTTCAAGCTTCTTGAACATGTTGGACTTGAAATGGATCTTCCTGTCATTATGATGTCTGTTGATGGAGAAACAAGTAGAGTGATGAAAGGTGTTCAACATGGAGCATGTGATTATTTACTTAAGCCTATACGGATGAAAGAATTGCGAAACATATGGCAACATGTCTTGAGAAAAAGAATACATGAGGCAAGAGAATTTGAAACTCTTGAGGGAATTCACTTAATGAGAAATGGATCAAATCACACTGATGACAGTAACATGTTTGCTGTAGGAGGAGAAATGAACTTAATGAAGAAAAGGAAAGATTTAGATAATAAACATGATGATGACAAAGAATTTGGAGATCAAACTTCCTTAAAGAAAGCTAGAGTAATTTGGTCTGTGGATCTTCATCAGAAGTTTGTTAAAGCAGTGAATCGAATTGGATTCGATAAAGTTGGTCCCAAGAAGATTCTAGATTTGATGAATGTTCCATGGCTGACTAGAGAAAATGTTGCTAGTCACTTGCAGAAGTACCGGCTCTACTTGAGTAGGTTGCAAAAGGAAAATGATCAGAAATCTTCCACAGGTCTAAGTTTTCTCAACTCTCTTAACAAGCAACAAAATGATGGTGCAATCGACGAGTTCAGATATTCAGATGGGACATTAAAACTTCATATGGATACTACAAGTCATGAAGTTGATCTCAATGGAATTGTGACAAGGCCaacaatagaaaaaataagagcTTCAACTTGTGATATTACTGATCCAAAGATACGAAAGAGTTCACAGATAGGCCGTAATCAACCATTTGAATCTGCAGAATCAGAAGCAAATCATACAGTTTTTGAGTACTCCACCGTTTCGACACAATGCTCTTGGAATGAAGTTCCAAAAAGGCCACTCAAAGAAGAACAAAATACACAGAAGCACTTCCAAATTGATCAATCACAATCAATGAATTCCAATCCCTCCGATTACAAGAGTGTTTACATTAGTCCTGTGAATTTAATGGTATCGGAAGTTGACACCTTTTCCAGTCAATCCAAAAGCCTCATCGCGAATGATCAATCTCCAGATATCATTTTCGCTTCAAATTTGAGTTCGAAAGACCCAGGATATAATCTCAGTTGCATTTCTGATATGGAAATTTACCAAAGAAACCTAATTTTGGATAGCCATGCAGCTTCAACACCTTTGGATGAAGacttacatttatttttgttacaagGTGAATACTATAATATGAACTTTGGCATGCAGAATATAGAGATGTCTGAGTATTATGATCCAAGGCTTATTGCTGAAGTTCCTACAAATTTGTATGATTCAGCAGATTACTCATAG 1596 0.3609 MVHNRSILSHNIDNGCFPSPHLDAFPAGLRVLVVDDDPTWLRILEKMLKKCFYQVTTCCLAIEALKKLREKKDAYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVLRKRIHEAREFETLEGIHLMRNGSNHTDDSNMFAVGGEMNLMKKRKDLDNKHDDDKEFGDQTSLKKARVIWSVDLHQKFVKAVNRIGFDKVGPKKILDLMNVPWLTRENVASHLQKYRLYLSRLQKENDQKSSTGLSFLNSLNKQQNDGAIDEFRYSDGTLKLHMDTTSHEVDLNGIVTRPTIEKIRASTCDITDPKIRKSSQIGRNQPFESAESEANHTVFEYSTVSTQCSWNEVPKRPLKEEQNTQKHFQIDQSQSMNSNPSDYKSVYISPVNLMVSEVDTFSSQSKSLIANDQSPDIIFASNLSSKDPGYNLSCISDMEIYQRNLILDSHAASTPLDEDLHLFLLQGEYYNMNFGMQNIEMSEYYDPRLIAEVPTNLYDSADYS 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g01238 531 CDD REC_typeB_ARR-like 31 145 - -
Tsu02g01238 531 SUPERFAMILY Homeodomain-like 208 267 IPR009057 -
Tsu02g01238 531 PANTHER TWO-COMPONENT RESPONSE REGULATOR 13 513 - -
Tsu02g01238 531 ProSiteProfiles Response regulatory domain profile. 30 145 IPR001789 GO:0000160
Tsu02g01238 531 Pfam Myb-like DNA-binding domain 215 262 IPR001005 -
Tsu02g01238 531 SMART REC_2 29 141 IPR001789 GO:0000160
Tsu02g01238 531 Pfam Response regulator receiver domain 31 140 IPR001789 GO:0000160
Tsu02g01238 531 PANTHER TWO-COMPONENT RESPONSE REGULATOR 13 513 IPR045279 GO:0009736
Tsu02g01238 531 PIRSF RR_ARR_type-B 8 513 IPR017053 GO:0003677|GO:0003700|GO:0009736
Tsu02g01238 531 SUPERFAMILY CheY-like 28 160 IPR011006 -
Tsu02g01238 531 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 210 263 IPR006447 GO:0003677
Tsu02g01238 531 Gene3D - 206 269 - -
Tsu02g01238 531 Gene3D - 29 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g01238 Tsu-Chr2 10505521 10508027 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g01238 22 457 Response Regulator Gene Family AT2G25180 40.090 2.15e-83 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Tsu02g01238 Response_reg 1.1e-23 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g01238 - K14491 gmx:100778324 750.74