Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g01228 ATGACAATTTTAGATGTTTTCCTAGGAACAACAAATGTAACATTTTTCTATGTGATTTTGATATGGGTTTTATTTGATAGTTTAAGATTAAGTAAaagtaacaatcttttacattttaaatactCACCaacaatttttgcttatatcactgttttttttagtgttgttatttctatttttaatgtagtttttgttttctatgATTATGTTACTAATGGAATCATAGGATTTAACTATGTTTCATTGGTTTTAACTTGGGTTTTAGCTactttggtttcattttattcaTTGAAGAACACACTTAAGGAGAGTAAAAGATTCCCTTTTGTTCTAATTCTTTGGTGGGTTTTTGTTACTTTTGTTGATATAATCTCATTAGCTTTGAAACTtatcaaaaattatgattccaTGAGGAACTTGTGGATTATGTTGTTAGAGGAGAACAAGAACATTGTTGATGTAGTTTCTTTGCCTATGTTGTTAGTACTATGTTTCAATGCATTTCCTAATGTGTGTGTAAGGGAAAAAAGTGAAATGGAACAAAGGTTACTTCAAAAAGAGTTTGAATCTACCACTTTAGGAAGTGATAGTGAAGAGGCTTTTGTAAAAGCTGGTTTATGGAGTAAACTTACATTTAGGTGGTTGAATCCTATTTTCGAAATCGGTCGGATTCAGAAGCTTGAACATGTTCATGTTCCTTCTGTTCCTCAATCTGAGACTGCTGCTAGTGCATCTTCTATGTTGGAAGAATCTATTAGAAAACAGAAACTTCAAGGTGGTTCATTGACAAAAGCTATTGTCCATTCTGTTTGGAAATCATTAGCCTTAAATGCTGTTTTAGCAGGTGTTAATACTATTGCCTCTTATATTGGTCCGTTGCTTATATCGAActttgtgaattttttattgtCGAATGATGATAATTCAAACATTAAATATGGAATGATTCTTGCCTTCattttctttctgtcaaaaactGTGGAGTCACTGAGCCAAAGACAATGGTATTTTGGCGCTCAGAGAATCGGAATTCAGGTGCGTGCAGCTCTTATGGCACTGGTTTATAGCAAGTCACTAACGATCAAGTGTGGTGGACCGACACATGGTAAAATCATCAATTTGATTAATGTGGATGTTGAAAGAATTGGTGACTTTTGTTGGTATGTTCATGGAGTTTGGTTGCTTCCGGTTCAGATTATTTTGGCCTTGGCGATCTTATACATAAATTTGGGTTACACGCCTTCTATTGCTGCACTTGTTGTTACTATTTTGGTCATGGTGTGTAACACACCTTTGGCTAATATGCAAGAAGGTTTGCATTCCAAGATAATGGAAGCTAAAGATTCAAGAATCAAAATGACTTCTGAGACTATGAAGAACATTAGAATTTTAAAGTTGCATTCATGGGAATCTACTTTTCTGCAGAAGCTTTTTCAACTTAGGGACACCGAGAGGAAGTGGTTGCATAAGTATCTCTACTTATGCTCGGCAGTAGCCACTCTATTTTGGGCATCGCCAACTTTGGTTTCGGTTTTCACTTTTGGCGCTTGTATATTGGTGAAAACCGAACTAACTGCAGCTACGGTTCTCTCAGCTCTTGCAACATTTCGTATTTTGCAAGAACCAATTTACAATTTACCTGAGCTTATTTCCATGATAACTCAAACAAAAGTCTCAGTTGATCGAATTCAGGATTTCATAAAGGAAGAAGATCAAAACCAATTCATGAATAAGCATGCTTCTAAAACTTCAACAATTGCTATTGAAATAAAGCCGGGAGAATATGCATGGGAAGAAAATGATCAATACCTCAAGAAACCAACGATTCATATTGCGGAGAAATTATTGATAAAGAAGGGTCAGAAGGTAGCAGTTTGCGGGCCTGTAGGGTCTGGAAAATCAAGCTTGCTTTGCAGTATGCTTGGTGAAATTTCATTGGTTTCTGGGGCAGCAACCAAAGTTTATGGGACTAGAAGTTATGTACCACAAAGTCCATGGATTCAATCTGGAACTATAAGAGATAATATATTGTTTGGGAAGCAAATGAATAAGGACTTTTATGAAAAAGTTGTGGATGATTGTGCATTGCTCCAAGATATCAATTTATGGAGTGATGGAGATTTAACCATGGTGGAGGAGAGGGGAATAAATTTAAGTGGAGGACAAAAACAACGAATTCAATTGGCAAGGGCTGTTTACAATGACTCGGATATTTATTTTCTCGATGATCCTTTTAGTGCTGTTGATGCTCATACGGGAAGCCATTTGTTTAAGGAATGTCTTATGAAACTTTTATACGATAAAACTGTTGTGTATGCTACACATCAAATGGAATTCTTGGAAGCTGCAGATCTTATTTTGGTTATGAAAGATGGAAAAATAGTTGAATCTGGAAGGTATAAAGATCTCATAGCATGTCCTTATAGTGAATTTGTCCAGCAAATGGCTGCTCATGAAGAAACAATATGCCAAATTCCATGCCGGAAAGATGAATCTGTTTGCTGCAGACCCTGCCAAAAAAATCCAACTGAAATCGCAGAAGAAAATATTCAAGAGATCATGATGGATTGGAAGAGAACAAGAGAAGAGGAAGCAATGACTGGTCGAGTAAAATGGAGTGTTTACTCAACCTTTGTCACATTAGCTTATAGAGGAGCACTTGTTCCAGTTATTCTTCTCTGTCAAGTTCTCTTTCAAGTTATGCAGATGGGAAGCAATTATTGGATGTCATGGGCTACAGAAGAAAAGGGAAGGGTCGACAATGCGCGGCTTATGGGAATATTTGCTCTTTTATCTGGTGGAAGCTCAGTTTTTATACTAGGAAGGACTGTTTTAATGGCAACAGTTGCCGTGGAGACTGCTCAACGCCTTTTTCATGGAATGATCACGTCAGTTTTCAGGGCACCTGTTTCATTTTTCGATACTACACCTTCAAGCAGAATTCTGAGTAGGTCTTCTACGGATCAAAGTACGGTAGATACAGACATACCATACAGATTAGCCGGACTAGTTTTTGCACTTATCCAGTTATTGAGTATCATTGTATTAATGTCTCAAGCTGCATGGCAAGtcattcttctcttttttgtgGTTCTTGCTATCTCCGTTTGGTATCAGGCCTATTACATCACTACAGCTAGGGAATTAGCCAGGATGGTGGGGATTCGGAAGGCGCCGATCTTGCATCACTTCTCAGAATCCATTGCTGGGGTTGCCACAATCCGTTGTTTCAATCAAGAGAAAATATTCTTGACCAAGGTTATGGCTTTAATTGACGATTATTCTCGGGTAGCCTTTCACAACTTTGCCACCATGGAATGGTTGTCTGTCAGAATcaattttctcttcaatttgGTCTTCTATTTTGTTCTCATCATCTTGGTTAGTTTGCCAAGGTCTGCCATTGATCCCAGCTTGGCAGGTCTTGTAGCAACTTATGGTTTGAACTTGAATGTGCTTCAAGCTTGGGTGATATGGAATTTATGCAATGTCGAGAACAAAATGATATCAGTAGAGAGAATATTACAATTCTCTAATATACCAAGTGAAGCGCCGTTAATTATTGAAGATTGTAGGCCTGAACCAGAGTGGCCTAAGGAAGGAATAATTGAATTCCATAACCTTCATATACAATATGATCCTACCGGTCCTATGGTTCTCAAAGGTGTCACTTGCATCTTCCCAGGACAAAAGAAAATTGGAGTAGTAGGCAGGACCGGGAGTGGAAAATCCACTCTGGTGCAAGCCCTTTTTCGAGTCGTGGAGCCTTTGGAAGGATGTATACTTATTGATGGCGTAAATATTTCTAAGATCGGTCTGCAAGATTTAAGATCTAAGCTTGGTATCATTCCTCAGGATCCAACCTTGTTTTTAGGTACTGTAAGGACTAACTTGGATCCCTTGGAACAACATACCGATAAAGAACTTTGGGAGGTTCTCAGCAAGTGCCATCTCGCCGAAATAGTACAGCAAGATCCAAGGCTTCTTGATGCACCAGTGGCCGAGAATGGAGAAAATTGGAGTGTTGGACAAAGACAACTAGTTTGCCTTGCTAGGCTGTTacttaagaaaagaaaaattttggTCCTGGACGAGGCAACTGCATCCATCGACACTGCAACTGATAATTTAATTCAAAAGACTATTAGAGAAGAAACAAGTGGATGCACAGTCATTACAGTAGCACATAGAATTCCTACTGTCATTGACAATGATTTGGTTTTGGTCCTTAATGAAGGGACGATTGCGGAGTATGATAAACCGTCTCAATTGCTACAAGACAGTTCTTCTTCGTTCTCAAAGTTGGTTTCGGAGTTTTTGAGGAGATCGTCCCAAAGTAATTCCTAA 4347 0.3658 MTILDVFLGTTNVTFFYVILIWVLFDSLRLSKSNNLLHFKYSPTIFAYITVFFSVVISIFNVVFVFYDYVTNGIIGFNYVSLVLTWVLATLVSFYSLKNTLKESKRFPFVLILWWVFVTFVDIISLALKLIKNYDSMRNLWIMLLEENKNIVDVVSLPMLLVLCFNAFPNVCVREKSEMEQRLLQKEFESTTLGSDSEEAFVKAGLWSKLTFRWLNPIFEIGRIQKLEHVHVPSVPQSETAASASSMLEESIRKQKLQGGSLTKAIVHSVWKSLALNAVLAGVNTIASYIGPLLISNFVNFLLSNDDNSNIKYGMILAFIFFLSKTVESLSQRQWYFGAQRIGIQVRAALMALVYSKSLTIKCGGPTHGKIINLINVDVERIGDFCWYVHGVWLLPVQIILALAILYINLGYTPSIAALVVTILVMVCNTPLANMQEGLHSKIMEAKDSRIKMTSETMKNIRILKLHSWESTFLQKLFQLRDTERKWLHKYLYLCSAVATLFWASPTLVSVFTFGACILVKTELTAATVLSALATFRILQEPIYNLPELISMITQTKVSVDRIQDFIKEEDQNQFMNKHASKTSTIAIEIKPGEYAWEENDQYLKKPTIHIAEKLLIKKGQKVAVCGPVGSGKSSLLCSMLGEISLVSGAATKVYGTRSYVPQSPWIQSGTIRDNILFGKQMNKDFYEKVVDDCALLQDINLWSDGDLTMVEERGINLSGGQKQRIQLARAVYNDSDIYFLDDPFSAVDAHTGSHLFKECLMKLLYDKTVVYATHQMEFLEAADLILVMKDGKIVESGRYKDLIACPYSEFVQQMAAHEETICQIPCRKDESVCCRPCQKNPTEIAEENIQEIMMDWKRTREEEAMTGRVKWSVYSTFVTLAYRGALVPVILLCQVLFQVMQMGSNYWMSWATEEKGRVDNARLMGIFALLSGGSSVFILGRTVLMATVAVETAQRLFHGMITSVFRAPVSFFDTTPSSRILSRSSTDQSTVDTDIPYRLAGLVFALIQLLSIIVLMSQAAWQVILLFFVVLAISVWYQAYYITTARELARMVGIRKAPILHHFSESIAGVATIRCFNQEKIFLTKVMALIDDYSRVAFHNFATMEWLSVRINFLFNLVFYFVLIILVSLPRSAIDPSLAGLVATYGLNLNVLQAWVIWNLCNVENKMISVERILQFSNIPSEAPLIIEDCRPEPEWPKEGIIEFHNLHIQYDPTGPMVLKGVTCIFPGQKKIGVVGRTGSGKSTLVQALFRVVEPLEGCILIDGVNISKIGLQDLRSKLGIIPQDPTLFLGTVRTNLDPLEQHTDKELWEVLSKCHLAEIVQQDPRLLDAPVAENGENWSVGQRQLVCLARLLLKKRKILVLDEATASIDTATDNLIQKTIREETSGCTVITVAHRIPTVIDNDLVLVLNEGTIAEYDKPSQLLQDSSSSFSKLVSEFLRRSSQSNS 1448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g01228 1448 CDD ABCC_MRP_domain2 1201 1421 - -
Tsu02g01228 1448 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 590 816 IPR003439 GO:0005524
Tsu02g01228 1448 Pfam ABC transporter 1220 1368 IPR003439 GO:0005524
Tsu02g01228 1448 Pfam ABC transporter 616 745 IPR003439 GO:0005524
Tsu02g01228 1448 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 275 555 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tsu02g01228 1448 PANTHER OS01G0902100 PROTEIN 108 1446 - -
Tsu02g01228 1448 SMART AAA_5 619 793 IPR003593 -
Tsu02g01228 1448 SMART AAA_5 1229 1422 IPR003593 -
Tsu02g01228 1448 ProSitePatterns ABC transporters family signature. 718 732 IPR017871 GO:0005524
Tsu02g01228 1448 Gene3D - 613 832 IPR027417 -
Tsu02g01228 1448 SUPERFAMILY ABC transporter transmembrane region 888 1183 IPR036640 GO:0005524|GO:0016021
Tsu02g01228 1448 CDD ABC_6TM_ABCC_D1 276 563 IPR044746 GO:0140359
Tsu02g01228 1448 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 890 1166 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tsu02g01228 1448 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1195 1429 IPR027417 -
Tsu02g01228 1448 CDD ABC_6TM_ABCC_D2 888 1178 IPR044726 GO:0140359
Tsu02g01228 1448 Pfam ABC transporter transmembrane region 891 1130 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tsu02g01228 1448 Pfam ABC transporter transmembrane region 276 542 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tsu02g01228 1448 Gene3D ABC transporter type 1, transmembrane domain 261 573 IPR036640 GO:0005524|GO:0016021
Tsu02g01228 1448 Gene3D ABC transporter type 1, transmembrane domain 854 1184 IPR036640 GO:0005524|GO:0016021
Tsu02g01228 1448 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1203 1437 IPR003439 GO:0005524
Tsu02g01228 1448 SUPERFAMILY ABC transporter transmembrane region 268 570 IPR036640 GO:0005524|GO:0016021
Tsu02g01228 1448 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 614 806 IPR027417 -
Tsu02g01228 1448 CDD ABCC_MRP_domain1 588 793 - -
Tsu02g01228 1448 Gene3D - 1186 1439 IPR027417 -
Tsu02g01228 1448 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 108 1446 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g01228 Tsu-Chr2 10386600 10393280 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g01228 603 822 Calmodulin-binding Proteins AT2G36910 29.098 1.11e-19 94.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g01228 - - gmx:100809063 2274.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g01228 02 10386600 10393280 Tsu02g01228 02 10386600 10393280 ECH