Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g01223 ATGAACCACCATTTGCCTTTCcacttgttcttcatcttcttctccgaTCCAACAAAAACAGCAAAAAAATGCAGTTTGATTCCGATTCAGATTCCGACGGATCTCACATCTCTTCAACTCCTCCAAGACAACCAAATCCATCACCACCAACCGCCGCCACCAAAACCATCTCTTCCAGTTTCcaacaaaaaatccaaaatcaaaaccaaacctAAACCCTCAAAATCCAATAAACTCCCTTCAAAACCTCCCGAAACTCTCCCCCAACAAGATTCTGACTCTTTCCCTCTCCTTTCCCTCTCTTCACTTCCTTTCCATATCCGACAACGAACCTCCGAAGCTCCTTCAACTTCATCTCCCCACTCCATTGAAACCCTCCCCGCTGGCTTCTTCTCCAAATCAATTTCATTCTCCAAAATTCGTAAACCCTTACTCAATCTAGAAGCTTCTGAAAACGAACCGGTAGTTAATTCCCCTAAAGCCGTTGTAAAATCCGCGAAGAAGCATCCTAATTTGATAGGCGCTAGTACGCCAACGCCGGTAGTAAAGGTACTACGAGGCGCTGGAGATGGTAATTTTgtgaaattgaatttgaatggtaagagaaaaaagtttttgagtAAAGGTTGgaacaaaaaaggaaaatttgGTAGTGGAAAAAGGTATAGAACTGGTTATAGTAGTTATAGAAGTAAACGTAAGAAATTGGATGATGAAGGGGAAGATAATGAGGAAGATGGTTTGGGTGAAGAGAATGCGAAGCAACAAGAAAAGCGAAAGGGTTGGGAAAATGAATGCAAAGTGTTGGAGGAGGCTGTGTTAGCAGCAAGAAATGAGGCTTCTGATGAGAATTTGGTGAGGTTGTTGAAATTGATTCATGGTTATGATTCTTTTCGAGAGGGGCAACTTGAGGCTATCAAGAATGTTCTTGGTGGGAAATCGACTATGCTTATTTTGCCGACTGGTGCAGGGAAGTCGTTGTGTTATCAGTTGAGTGCATTGATTTTGCCGGGGATTACACTTGTTGTTAGTCCGTTGATAGCTTTGATGATTGATCAGCTTAGACAATTGCCTCCGCTGATTTCGGGTGCTCTTCTAAGCAGTTCTCAGACGCTTGAAGAATCATCTGAAACGCTCAACCAGGTTCGGCAAGGCACAATAAAGGTGCTTTTTGTTTCACCAGAACGGTTCTTGAATGAAGAGTTTCTGTCTGTTATCTCTGCTGTGTCAGCAGTGTCACTCGTTGTTATTGATGAAGCACATTGTATATCTGAATGgTCTCACAATTTCCGACCTTCATTCATGAGACTTAGAGCATCACTACTTCATAAAAGTCTTAACGTAGGTTCTGTTCTTGCAATGACAGCAACTGCTACAACTACGACTTTAGACGCCGTCATGTCTGCTCTAGATATTCCTTACACAAATCTTATTCAGAATGCACACTTAAGGGACAATTTGCGTTTATCAGTGTCTTTGATAAAAAATAGGCAAGACCTATTGGTTCTGATAAAGTCTTCTCCTTTCACGGAAGTTAAAAGCATCATAGTATACTGCAAATTTCAGtcTGAAACTGATCAAATCAGCAGATACTTGAATGATAACAATATCAAGGCAAAGAGTTATCATAGTGGTATTTCTGCAAAGGAACGTGGCTACGTACAAGAGTTGTTTGGTTCAAACAAGATCAGAGTGGTCGTTGCAACTGTGGCATTTGGCATGGGACTGGATAAAAGAGATGTTGGAGCAGTAATTCATTACAGTTTACCCGAAAGTCTGGAAGAGTATGTACAGGAGATAGGACGTGCTGGAAGGGATGGAAGGTTATCCTATTGTCACCTATTTTATGATGATGAGATGTATTTCAAACTTCGTAGTCTAATGTACAGTGAAGGAGTAGATGAGTATGCCGTGAATAAATTTATGTCTGAAGTATTTCCTGCTGACAAAAGCTCATGTGGGAAAATCTGTTCGTTAATCAAAGAATCTGCTGCACGCAGATTTGATATGAAAGAAGAGGTAATTCTCACAGTTTTGACACACTTGGAGCTGGGTGACGTGCAATACTTACATTTACTTCCACAAACAAATGCTACCTGTGTTCTGAATTTTCATATGACTCCGGCTGTGTCCCTTGCCCAAAAGGTTTCTGCTATTGCTGTGATTCTTAAAAGATCTGAAAATAAGCACGGACAATATATTTTTGATATTCCAACTGTGGCAAATGACATGGGGGTCACACCAGTTGAATTAACAAATCAGTTGTACTACCTAAAGTTGAAGGGAGAAATAACTTATGAAATGAAGGACATGGCCTACTGTTATAGGATTCTTGAAGTCCCAACAGACTTTTTTTCTCTATCGGCTGATATTACCAAATGGTTATCTGAAGTTGAAAGTTGTAAGGTAgTACGGAAAATGGATGTAATGTTTAATGCTGCATATTTCGCAGTAAATCTATGTGATAAGATGAACGGTTGCAGTAGTGCCAATCACACTTCATGCTTGCAAAGGATAATATTGGATTACTTTGCTGGAGTTGATAATATTGATTTCTGCAAGAAAATCAGTCAAAGCAGTCCTTTCCTGCGGGCAGATATAAAGGTCTTTCTACAGAGCAATTCACATGCACGCTTTACACCGAGAGCTGTTGCGAGAGTAATGCACGGAATTGCAAGCCCAGCCTACCCTTATACAATATGGGGTAAAACCCATTTCTGGGGAAGGTATACCAAGATAGACTTTAAGGTGGTGATGGAAGCAGCAAAGGAAGAACTCAAAAATTTTATTGGAAAAGATATGATCTAG 2808 0.3892 MNHHLPFHLFFIFFSDPTKTAKKCSLIPIQIPTDLTSLQLLQDNQIHHHQPPPPKPSLPVSNKKSKIKTKPKPSKSNKLPSKPPETLPQQDSDSFPLLSLSSLPFHIRQRTSEAPSTSSPHSIETLPAGFFSKSISFSKIRKPLLNLEASENEPVVNSPKAVVKSAKKHPNLIGASTPTPVVKVLRGAGDGNFVKLNLNGKRKKFLSKGWNKKGKFGSGKRYRTGYSSYRSKRKKLDDEGEDNEEDGLGEENAKQQEKRKGWENECKVLEEAVLAARNEASDENLVRLLKLIHGYDSFREGQLEAIKNVLGGKSTMLILPTGAGKSLCYQLSALILPGITLVVSPLIALMIDQLRQLPPLISGALLSSSQTLEESSETLNQVRQGTIKVLFVSPERFLNEEFLSVISAVSAVSLVVIDEAHCISEWSHNFRPSFMRLRASLLHKSLNVGSVLAMTATATTTTLDAVMSALDIPYTNLIQNAHLRDNLRLSVSLIKNRQDLLVLIKSSPFTEVKSIIVYCKFQSETDQISRYLNDNNIKAKSYHSGISAKERGYVQELFGSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFYDDEMYFKLRSLMYSEGVDEYAVNKFMSEVFPADKSSCGKICSLIKESAARRFDMKEEVILTVLTHLELGDVQYLHLLPQTNATCVLNFHMTPAVSLAQKVSAIAVILKRSENKHGQYIFDIPTVANDMGVTPVELTNQLYYLKLKGEITYEMKDMAYCYRILEVPTDFFSLSADITKWLSEVESCKVVRKMDVMFNAAYFAVNLCDKMNGCSSANHTSCLQRIILDYFAGVDNIDFCKKISQSSPFLRADIKVFLQSNSHARFTPRAVARVMHGIASPAYPYTIWGKTHFWGRYTKIDFKVVMEAAKEELKNFIGKDMI 935
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g01223 935 Gene3D - 268 475 IPR027417 -
Tsu02g01223 935 MobiDBLite consensus disorder prediction 227 261 - -
Tsu02g01223 935 Pfam DEAD/DEAH box helicase 301 462 IPR011545 GO:0003676|GO:0005524
Tsu02g01223 935 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 306 476 IPR014001 -
Tsu02g01223 935 Gene3D - 484 665 IPR027417 -
Tsu02g01223 935 CDD SF2_C_RecQ 484 616 - -
Tsu02g01223 935 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 496 646 IPR001650 -
Tsu02g01223 935 PANTHER DNA HELICASE RECQ FAMILY MEMBER 67 858 - -
Tsu02g01223 935 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 338 619 IPR027417 -
Tsu02g01223 935 MobiDBLite consensus disorder prediction 46 94 - -
Tsu02g01223 935 SMART helicmild6 526 607 IPR001650 -
Tsu02g01223 935 Pfam Helicase conserved C-terminal domain 512 606 IPR001650 -
Tsu02g01223 935 PANTHER ATP-DEPENDENT DNA HELICASE Q4 67 858 - -
Tsu02g01223 935 SMART ultradead3 294 492 IPR014001 -
Tsu02g01223 935 MobiDBLite consensus disorder prediction 76 94 - -
Tsu02g01223 935 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 413 422 IPR002464 -
Tsu02g01223 935 Coils Coil 252 279 - -
Tsu02g01223 935 TIGRFAM recQ_fam: ATP-dependent DNA helicase, RecQ family 288 645 IPR004589 GO:0004386|GO:0006310
Tsu02g01223 935 CDD DEXHc_RecQ4-like 286 483 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g01223 Tsu-Chr2 10351765 10359032 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g01223 512 639 Eukaryotic Initiation Factors Gene Family AT3G19760 30.000 7.72e-13 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g01223 K10730 - gmx:100811214 1184.47