Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g01221 ATGGCTGCTGGTAGACATGGAAGTTACCACGAAAACGAGTTTAAGGATCATGAGTCCAATTTGGAAGTTACTAGGCGCGggttttcaaattcaaaagaGTATGATCCGGTTAAGAATGGTGGTCATGATGGTGTGAGGAGTGGAGGGAGAGATTCGAGGGAGAGGGATGGGATTAGGACGAGGCAGAGGGATGTTAGGGAGAGAGATGCTGTTACTAATGGCAGTTACAGGTCATCTTCCAGCAGGAGTGATTCTGGCAGTAGTGGAAGTCTAGGACCTCGTCGTTGTGGTTTTACTGTGAAGACAGTTGATAGAGAGCCTGGTGAGCTTTCTAGTGAGAGTGGGTCTGATGGTGCTGTTGAATCTGAATCTGTGGTGAAAGGTTGTGAGGCTGCTATGTTTGAAGGAAACAGGTCTCGTTCACCTGCACCACAGGAGAAGAAAAGGAAATTTTCGCCCATAGTGTGGGATCAGGATGACAAGGAAGTGAAGGCTTCAACAAAGGTTAGGGTCTCGACAACACCGGTGGCTGCTCTTCCTCCTCTGCCTCAGCTGTCAAAATCGTCTGTTCTGTCACCGGCTGCTTCTTACGGTGAGGTTCAAGCACAAGCACGTTCTGTTAGGAGCAGAGAAACGAGGGATCTTGAGTTGCCCACTGTAGCTAAGGTTACTGTTCCCTCTCCTTCCGGACTGCAGTCCTTGTCACCGAAACAGACTTGGGGTAGTGATCAGGAAGCTGAGCAGCCAGAAGGTGAAGATTATGTTCCAACTCGTAATATATCATCTTCACGATGGGCAGCTGGAGATAACTCTCCTGTTGATGAGGGTGAAATTCTCAATGATGAGGAAATGCCCAAAAGGAAGAAGAGGCTAACTCCTGAGTTGTTGGAGACTAGAGTGAGGAACAAGTTATTGAGCCCCGATGATTCTAAAATGGGTGGTTTTGAAGGAGCTAGAGCCAGATCATCTGATTCGGAAGAAAGAAGTGTTATCCATGGGAGAACGTCCAGTGGCGATGGACATCCTGGTATTGAATCAGAAAAGGATGACTATATGGACATTGATGTTCGAGGTATGAAAAGTGACACCAGTAATAGTCACTCAGATACGGAATCTGAAGATGATGAGGATAGGCCGGAGACTCCAGAACCACCAGCTCAACCTCAAAGAATGGTCAACATGCTTCAGGGTTGTAGAAGTGTTGATGAGTTTGAGAGACTTAACAAGATAGATGAAGGAACGTACGGTGTTGTATATAGGGCAAAAGATAAGAAGACCGGGGAAGTTGTAGCATTAAAGAAGGTCAAGATGGAGAAGGAAAAAGAAGGCTTCCCACTGACTTCTCTTAGGGAAATAAacattcttctttcttttcaccACCCATACATAGTTGATGTCAAGGAAGTAGTGGTTGGAAGTAGCCTTGATAGTATTTTCATGGTTATGGAATACATGGAACATGATCTTAAAGGATTAATGGAGTCAATGAAGCAACCATTTAGCCAAAGTGAAGTGAAGTGCTTAATGATCCAGCTTTTAGAAGGTGTGAAGTATCTTCATGACAACTGGGTGCTTCATAGGGATTTGAAGACTTCAAACCTGCTTTTAAATAACAGGGGTGAGctaaaaatttgtgattttggGTTGGCTCGTCAATATGGGAGTCCTTTGAAACCATATACTCACCTGGTGGTTACTCTTTGGTACAGGGCACCTGAACTTCTTCTGGGGGCAAAACAGTACTCAACAGCTATTGATATGTGGTCTCTAGGTTGTATAATGGCTGAGCTATTGTCTAAGGAACCGCTGTTCAATGGAAAAACGGAATTTGATCAACTTGACAAGATTTTCAGGATACTTGGCACTCCAAATGAAACAATTTGGCCGGGCTTCTCAAAATTACCCGGAGTCAAGGTCAATTTTGTCAAGCACCAGCTTCCAACTTTGGGTGGTTTGGTATAA 1962 0.4368 MAAGRHGSYHENEFKDHESNLEVTRRGFSNSKEYDPVKNGGHDGVRSGGRDSRERDGIRTRQRDVRERDAVTNGSYRSSSSRSDSGSSGSLGPRRCGFTVKTVDREPGELSSESGSDGAVESESVVKGCEAAMFEGNRSRSPAPQEKKRKFSPIVWDQDDKEVKASTKVRVSTTPVAALPPLPQLSKSSVLSPAASYGEVQAQARSVRSRETRDLELPTVAKVTVPSPSGLQSLSPKQTWGSDQEAEQPEGEDYVPTRNISSSRWAAGDNSPVDEGEILNDEEMPKRKKRLTPELLETRVRNKLLSPDDSKMGGFEGARARSSDSEERSVIHGRTSSGDGHPGIESEKDDYMDIDVRGMKSDTSNSHSDTESEDDEDRPETPEPPAQPQRMVNMLQGCRSVDEFERLNKIDEGTYGVVYRAKDKKTGEVVALKKVKMEKEKEGFPLTSLREINILLSFHHPYIVDVKEVVVGSSLDSIFMVMEYMEHDLKGLMESMKQPFSQSEVKCLMIQLLEGVKYLHDNWVLHRDLKTSNLLLNNRGELKICDFGLARQYGSPLKPYTHLVVTLWYRAPELLLGAKQYSTAIDMWSLGCIMAELLSKEPLFNGKTEFDQLDKIFRILGTPNETIWPGFSKLPGVKVNFVKHQLPTLGGLV 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g01221 653 MobiDBLite consensus disorder prediction 8 71 - -
Tsu02g01221 653 MobiDBLite consensus disorder prediction 141 155 - -
Tsu02g01221 653 Gene3D Transferase(Phosphotransferase) domain 1 487 648 - -
Tsu02g01221 653 ProSiteProfiles Protein kinase domain profile. 404 653 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu02g01221 653 MobiDBLite consensus disorder prediction 320 334 - -
Tsu02g01221 653 MobiDBLite consensus disorder prediction 1 155 - -
Tsu02g01221 653 MobiDBLite consensus disorder prediction 279 306 - -
Tsu02g01221 653 MobiDBLite consensus disorder prediction 341 372 - -
Tsu02g01221 653 SMART serkin_6 404 647 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu02g01221 653 SUPERFAMILY Protein kinase-like (PK-like) 396 641 IPR011009 -
Tsu02g01221 653 MobiDBLite consensus disorder prediction 225 245 - -
Tsu02g01221 653 PANTHER - 137 649 - -
Tsu02g01221 653 Pfam Protein kinase domain 404 634 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu02g01221 653 CDD STKc_CDC2L1 398 645 IPR045267 GO:0004674|GO:0005524|GO:0006468
Tsu02g01221 653 Gene3D Phosphorylase Kinase; domain 1 388 486 - -
Tsu02g01221 653 PANTHER CELL DIVISION PROTEIN KINASE 137 649 - -
Tsu02g01221 653 ProSitePatterns Serine/Threonine protein kinases active-site signature. 524 536 IPR008271 GO:0004672|GO:0006468
Tsu02g01221 653 MobiDBLite consensus disorder prediction 72 92 - -
Tsu02g01221 653 MobiDBLite consensus disorder prediction 179 391 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g01221 Tsu-Chr2 10335344 10341536 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g01221 395 635 Core Cell Cycle Gene Families AT5G10270 52.344 3.48e-86 277
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-PITSLRE Tsu02g01221 Pkinase 4.8e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g01221 K08818 - gmx:100792524 935.25