Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g01212 ATGATGGATACTGCTGAGGTTGAAGAAAATCTATTTGCTGTTAGCGATGCCAAGTTACATGGACAAATGTGCAAGGCTTTTTCTATAATATATTGCAAAGTATTGACAATATTTCCTTCTTTAGAAGCAGCTAGGCCTAGGAGTAAAACCGGAATTCAGGCATTATGTTCATTGCATGTGGCCTTAGAGAAAGCCAAGAATGTTCTTCATCATTGCTCAGTGTGTAGTAAACTCTACCTGGCTGTAACTGGGGATTCCGTTCTCCTGAAATTTGAGAAGGCTAAATGTGCTCTTGAAGATAGTCTTAGACGGGTGGAAGATATTGTTCCACAATCCATTGGATGTCAGGTTCAGGAGATTGTGAATGAATTTTCATGTCTGGAATTTGCACTTGATCCCTTAGAGAAGCAAGTTGGCGATGATTTAATTTCATTGCTCCAGCAGGGCAAAAAGTTTGATGACGATAGTGAAAGTTATGAGCTTGAATCTTTTCACCAGGCTGCTACTAGACTTGGAATTACATCTTCAAGAGTTGCTCTTGCTGAAAGAAGAGCTCTCAAGAAACTTATAGACAGGGCTCGGGCTGAAGAAGACAAACGAAAGGAATCAATTGTTGCATATCTTTTGCATCTTATGAGGAAATACTCCAAGTTATTCAGAAATGAGTTTGCAGATGACAATGATTCTCAGGGTTCTGGTCCTTGTTCTCCCACTGTTCAGGGATCTATCGAGGATGGTGTTCCTGTTGGTCATAGTCAGGCTTTTGAAAGACAGCTTTCAAAACTTAGTTCCTTTAATTTCAAACCAAATAATAATATGGAGCCGGGGCAGATGGCTCTACCACCGGAAGAGTTAAGGTGTCCAATATCTCTACAACTTATGTATGATCCTGTCATCATTGCTTCTGGGCAAACATATGAAAAGGTTTGCATAGAGAAATGGTTCGGTGATGGACACAGCAACTGCCCAAAGACCCAACAAAGCCTTCCACATCTTTGCTTGACTCCTAATTACTGTGTTAAAGGTCTTGTTGCTAGTTGGTGTGAACAAAATGGAATTCCTATTCCTGAAGGCCCTCCTGAATCACTTGATCTTAACTACTGGAGATTGGTATTATCAGAGTCCGAGTCTACAAATTCAAGATCTGTAAATAGTGTAAGCTCTTGCAAGTTGAAGGGTGTCAAAGTGGTTCCTTTCGAAGAGAGTTGTATCTCAGAGAATTATGGCGAAAATAGAGCTGAAAGTGTATCTGCACAAGAGGAAGACACTGAGCAGTATCTTAGTTTTCTGAAAGTCTTGACTGAGGGGAACGATTGGAAGAGGAAATATGAAGTGGTAGAACAGTTAAGGCTGTTGCTAAGGGATGATGAGGAAGCTAGAATTTTGATGGGGGCTAATGGGTTTGTTGAAGCACTTGTTCAGTTTTTACAATCGGCTGTCCATGAAAGGAATTTGACCGCTCAGGAAAGCGGAGCAATGGCTCTCTTCAACCTAGCTGTGAATAATGACAGAAATAAGGAGATTTTGTTATCAGCTGGAGTTTTATCTTTGTTGGAGGAAATGATTTCTAACACCGGTTCTTATGGTTGTGCAACTGCTCTATATCTGAATCTCTCCTGCCTTGAAGAAGCCAAACCTATCATTGGCACAAGTCAGGCTGTACAGTTCCTAACCCAGATTCTTCAATCTGACTATGACATTCAATACAAGCAAGATTCTCTCCATGCTCTCTATAATCTTTCTACTGTGCCTTCCAATATTCCCTACTTACTTTCATCTGGTATTGTTAATGGTCTACAATCCCTTCTTGTAGACCAGGGTGATGATTGTACATGGACAGAAAAATGCATAGCAGTTTTGATAAATTTAGCTACTTCTCAAGTTGGAAGGGAGGAAATGGTATCAACTCCTGAACTCATTAGTGCGTTGGCTTCAATATTGGACACTGATGAGCTCGAAGTGCAGGAGCAAGCTGTCTCTTGTCTCCTAATTTTGTGCAACAGAAGTGAACAATGTTCTGACATGGTCCTGCAAGAAGGGGTTATACCTGCATTGGTATCAATATCAGTGAATGGAACCTCAAGAGGACAAGAAAAAGCTCAGAAACTCTTGATGCTATTCCGACAGCAGCGACGAGATGATTCACCTGTTGAAACACATCAGTCTCCTCCTGAAACTAGTGATTTCTCTGTGCCACCTGCTGAAATGAAACCTCTATGTAAGTCATTGACTAGAAGAAAAACTGGGAAAGCTTTTAGCTTTTTCTGGAGAAGCAAGAGCTATTCTGTGTACCAGTGTTGA 2301 0.409 MMDTAEVEENLFAVSDAKLHGQMCKAFSIIYCKVLTIFPSLEAARPRSKTGIQALCSLHVALEKAKNVLHHCSVCSKLYLAVTGDSVLLKFEKAKCALEDSLRRVEDIVPQSIGCQVQEIVNEFSCLEFALDPLEKQVGDDLISLLQQGKKFDDDSESYELESFHQAATRLGITSSRVALAERRALKKLIDRARAEEDKRKESIVAYLLHLMRKYSKLFRNEFADDNDSQGSGPCSPTVQGSIEDGVPVGHSQAFERQLSKLSSFNFKPNNNMEPGQMALPPEELRCPISLQLMYDPVIIASGQTYEKVCIEKWFGDGHSNCPKTQQSLPHLCLTPNYCVKGLVASWCEQNGIPIPEGPPESLDLNYWRLVLSESESTNSRSVNSVSSCKLKGVKVVPFEESCISENYGENRAESVSAQEEDTEQYLSFLKVLTEGNDWKRKYEVVEQLRLLLRDDEEARILMGANGFVEALVQFLQSAVHERNLTAQESGAMALFNLAVNNDRNKEILLSAGVLSLLEEMISNTGSYGCATALYLNLSCLEEAKPIIGTSQAVQFLTQILQSDYDIQYKQDSLHALYNLSTVPSNIPYLLSSGIVNGLQSLLVDQGDDCTWTEKCIAVLINLATSQVGREEMVSTPELISALASILDTDELEVQEQAVSCLLILCNRSEQCSDMVLQEGVIPALVSISVNGTSRGQEKAQKLLMLFRQQRRDDSPVETHQSPPETSDFSVPPAEMKPLCKSLTRRKTGKAFSFFWRSKSYSVYQC 766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g01212 766 SMART Ubox_2 284 347 IPR003613 GO:0004842|GO:0016567
Tsu02g01212 766 PANTHER U BOX DOMAIN-CONTAINING 2 758 - -
Tsu02g01212 766 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 280 354 IPR013083 -
Tsu02g01212 766 ProSiteProfiles U-box domain profile. 280 354 IPR003613 GO:0004842|GO:0016567
Tsu02g01212 766 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 2 758 - -
Tsu02g01212 766 Pfam U-box domain 282 351 IPR003613 GO:0004842|GO:0016567
Tsu02g01212 766 MobiDBLite consensus disorder prediction 713 734 - -
Tsu02g01212 766 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 467 513 IPR000225 GO:0005515
Tsu02g01212 766 Gene3D - 411 715 IPR011989 -
Tsu02g01212 766 SUPERFAMILY ARM repeat 429 709 IPR016024 -
Tsu02g01212 766 SMART arm_5 625 667 IPR000225 GO:0005515
Tsu02g01212 766 SMART arm_5 456 500 IPR000225 GO:0005515
Tsu02g01212 766 SMART arm_5 541 582 IPR000225 GO:0005515
Tsu02g01212 766 SUPERFAMILY RING/U-box 278 356 - -
Tsu02g01212 766 CDD RING-Ubox_PUB 285 327 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g01212 Tsu-Chr2 10243697 10248975 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g01212 2 765 U-box Gene Family AT1G24330 64.827 0.0 1008
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g01212 - - gmx:100794099 1257.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g02727 07 31928329 31933590 Tsu02g01212 02 10243697 10248975 PCT