Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g01203 ATGGCTGTCGGATTCGGGTCATCCGAAGATGTTTCCGGTTTCAAATTCCTTTTCCTTATGACGGTTGTGTATGGTCTCATGTCTATGCTTACATACTCAGTTATTCATATGAACTTCATCAATCCACTTCATATCGATGCTCCTCGAGATCGATTTTCTGAAGGTAGAGCTATTGAACATGTTCGAATGTTGTCTCAAGAGATCGACGGTCGTCAAgAAGGACGTCCTGGTTTGAAAAAAGCTGCTGATTACATTAAGAGTGAGTTGGAATTAATTAAGGACAGAGCTAGTTCTAATGTCAGAATTGAGATTGAAGAGAGTACTGTTAGTGGCTCCTTTAATATGAACTTTTTGGGTCACAATATAGCTTTGGGATACAGAAAtcatactaatattattatgagGATATCATCAATAAATTCTAAAGATACTGATCCATCAGTTTTAGTGAACGGACATTTTGATAGTCCACTTGGTTCCCCCGGTGCTGGTGATTGTGGTTCATGTGTTGCATCAATGCTGGAAATTGCAAGACTAATCGTGGACTCTAGTTGGGTTCCACACCACcctgttatttttctttttaacggTGCTGAGGAACTTTTCATGTTGGGTTCACATGGATTCATGAAGACAAATAAATGGAACAACACGATAGGAGCTTTTGTAAATGTGGAGGCGTCTGGGACTGGAGGGCCTGATTTAGTATGCCAATCTGGACCAAGTTCTTGGCCTTCTAATATCTACGCAGAAGCAGCAATATACCCTATGGCTACTAGTGCAGCTCAGGATGTTTTTCCTATTATTCCTGGAGATACAGATTACCGAATATTTTCCGAAGACTACGGCAGTATTCCCGGGCTTGACATTATCTTCCTCCTTGGTGGTTATTTTTACCATACCTCTTTTGATACAGTGGAGCAACTATTACCCGGAAGCATCCAAGCACGTGGAGAAAATTTGTTCAGCATAATCAAGGCTTTTAGCAATTCTTCTAAGTTACAAAACACATATCAAACAAATTATACTGAAGCTAGAGCTAGCTTATTCAACGAAGAGCGAGCTATATTCTTTGATTATCTCTCGTGGTTTATGATATTTTATTCCAAAAGGGTAGCTAAAATTCTTCACAGCTTTCCTGTCTTCTTGTTCTTTGTTATGCCTTTTACGCATGGCCGGCTCAGTTCTTGTTTGTCAACTTTGTGTGATTTTGTGAAAGGATTTCTGTTACATGCAGTTGGGATTATATTGGCAATTATTGTGCCTGTTGTGTTTTCTTTGCTGAGATTACTGTTCACTTCTCAGACGATGAATTGGTTTGCTCATCCATTTTTGGCTTTCATGATGTTTATACCATGCGCACTCGTCGGTCTTATAATTCCAAGAATTATCTGGAGACATTTTCCTCTTTCTCAAGATGCTGCAGTTGTCAAGAGATCAAAAGAGGCACTATCTGATGAAGCAAGGTTTTGGGGAGCATTTGGGTTCTATGCCTCGTTAACTTTGGCGTATCTTGTAGCTGGTTTAAGTGGAGGTTTTGTGACTTTTGTTGCGTCTGCTTCCATGCTTCCGTCATGGATATCCTTCAGCTTATCAGTCAAATCCTTTGGACGGCATTCATTCAGGTCAACAATGTTTTACATATTACCCCTTCTTCCATGCCTTGCATACGCTGTTTATTTTGGTGGCTTTCTTGCTCAATTTCTGATCGAGAAGATGGGCATGATGGGTTCTCTTCCTCTACCATATGGGCACTATGTTCCGGATATTATCGTGGCAGCAGTAATTGGACTTATAACTGGTTGGTCTGTGGGCCCTCTAATGCCCATTTGTGGTCGTTGGTTAGCAAGGTCATCTATTTTGCGATTTCTGCTGCATCTTAGTCTGCTTGGTTTGGCGATATCTTCTCAGTTCTTTCCTTACTCCACGTCTGCACCTAAGAGAATTGTTTTTCAGCACACTTTCCGAACTACAGGCGTGAGTCAGATAATGGAATCCACTTATGATTTTTCTGTACTAGATTCCAATTCTTTACTATTCATTTTCAAACACTCACCTGAAGTAGCAAAAACATTGAATGTTACTTCGGATTTTTCGCTTGAATCTGCATCACTGTCTAAACGCCACGATTGGATGGTAATTTTTCCCgtttcttctctcttttcaaATAGTCTGAAGTTCCCTGCAAAAGAGGATGATATTTTGAAGCAGTATGAATTCTTTCCCACATTGTCTGTTCAAAATACATCTTCAGATTCCAAAAAGGGACATAGAAGAGTTCACTTGGAGTTTTATTTAGGTTCCTTAGAAGAGATCTGGGTTGCAGTTCTTAACATCACCGGTCCATTATCTAGTTGGTCATTTGCAGATAATGTGCTTCCAGGAACCGAAGCTTATGGTGGCGGTCCACCATCATATATATTACGACTTAGCGGACCGAGTGACAGGAATTGGTCTTTCTGGTTAGAGGCTAATAGCTCTGAAGCATTGAGAGTGGAGCTTTCAGTTTTGGACCAAAAGTTGGTTGATCCAGCAAAAAGATTGAAGAATCTTTTCCCTAAATGGGTTGATGTAGTTGCTCCAACAGTCACCATGTTTCGTCGCATTACGATGTTTTCTTATGGATCGCGTTTGTGGCTTATGCTTCGTGTTCTAATTGTTCTGCATCAGATTGTGTTTTTGTTGCTTGCGATTTGGTTTCGGTTTGGCATTGGGGTTGCCGTTTTGGTTGTGGCTGATGCGATGAGGTTTAGTGTTCAAGTAGGATTTGTTATTTTGTGCTATACCTCCATTGATTCTTGCCCTGAGCCCTCCATAGTTTCTCTGCAGCTTCCGCCACAATCAGTCGTCATGGTTAAGTACTCAAGAGAACCCGATAACCCTACCAAGTCCACTAAGGCACGAGGTGCAGATCTTAGAGTTCATTTCAAGAACACTAGGGAAACAGCATTTGCCATCAGGAAGTTGTCCTTGACCAAGGCCAAAAGGTACTTGGAGGATGTTCTTGCACACAAACAGGCCATTCCATTCAGACGTTTCTGCCGTGGTGTTGGGAGGACTGCCCAGGCCAAGAATAGACACTCTAATGGACAAGGAAGGTGGCCCGCCAAGTCTGCAAAGTTCATCCTTGACTTGCTCAAGAATGCCGAGAGCAACGCTGAAGTGAAAGGTTTGGATGTTGATGCGCTATATGTTTCACATATCCAAGTCAATCAAGCACAGAAGCAAAGACGCCGAACATACAGAGCCCATGGAAGAATCAACCCTTACATGTCATCTCCCTGCCACATCGAGTTGATTTTATCTGAAAAGGAAGAGCCAGTCAGGAAGGAGCCTGAGTCCCAGTTGGCAACCAACAAGAAGGCTTAA 3369 0.4117 MAVGFGSSEDVSGFKFLFLMTVVYGLMSMLTYSVIHMNFINPLHIDAPRDRFSEGRAIEHVRMLSQEIDGRQEGRPGLKKAADYIKSELELIKDRASSNVRIEIEESTVSGSFNMNFLGHNIALGYRNHTNIIMRISSINSKDTDPSVLVNGHFDSPLGSPGAGDCGSCVASMLEIARLIVDSSWVPHHPVIFLFNGAEELFMLGSHGFMKTNKWNNTIGAFVNVEASGTGGPDLVCQSGPSSWPSNIYAEAAIYPMATSAAQDVFPIIPGDTDYRIFSEDYGSIPGLDIIFLLGGYFYHTSFDTVEQLLPGSIQARGENLFSIIKAFSNSSKLQNTYQTNYTEARASLFNEERAIFFDYLSWFMIFYSKRVAKILHSFPVFLFFVMPFTHGRLSSCLSTLCDFVKGFLLHAVGIILAIIVPVVFSLLRLLFTSQTMNWFAHPFLAFMMFIPCALVGLIIPRIIWRHFPLSQDAAVVKRSKEALSDEARFWGAFGFYASLTLAYLVAGLSGGFVTFVASASMLPSWISFSLSVKSFGRHSFRSTMFYILPLLPCLAYAVYFGGFLAQFLIEKMGMMGSLPLPYGHYVPDIIVAAVIGLITGWSVGPLMPICGRWLARSSILRFLLHLSLLGLAISSQFFPYSTSAPKRIVFQHTFRTTGVSQIMESTYDFSVLDSNSLLFIFKHSPEVAKTLNVTSDFSLESASLSKRHDWMVIFPVSSLFSNSLKFPAKEDDILKQYEFFPTLSVQNTSSDSKKGHRRVHLEFYLGSLEEIWVAVLNITGPLSSWSFADNVLPGTEAYGGGPPSYILRLSGPSDRNWSFWLEANSSEALRVELSVLDQKLVDPAKRLKNLFPKWVDVVAPTVTMFRRITMFSYGSRLWLMLRVLIVLHQIVFLLLAIWFRFGIGVAVLVVADAMRFSVQVGFVILCYTSIDSCPEPSIVSLQLPPQSVVMVKYSREPDNPTKSTKARGADLRVHFKNTRETAFAIRKLSLTKAKRYLEDVLAHKQAIPFRRFCRGVGRTAQAKNRHSNGQGRWPAKSAKFILDLLKNAESNAEVKGLDVDALYVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVRKEPESQLATNKKA 1122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g01203 1122 ProSitePatterns Ribosomal protein L22 signature. 1077 1101 IPR018260 GO:0003735|GO:0005840|GO:0006412
Tsu02g01203 1122 Hamap 50S ribosomal protein L22 [rplV]. 950 1104 IPR005721 GO:0003735|GO:0006412|GO:0015934
Tsu02g01203 1122 TIGRFAM uL22_arch_euk: ribosomal protein uL22 954 1104 IPR005721 GO:0003735|GO:0006412|GO:0015934
Tsu02g01203 1122 PANTHER METALLOPEPTIDASE M28 FAMILY MEMBER 7 860 IPR045175 GO:0006508|GO:0008235
Tsu02g01203 1122 SUPERFAMILY Ribosomal protein L22 951 1104 IPR036394 GO:0003735|GO:0005840|GO:0006412
Tsu02g01203 1122 CDD Ribosomal_L22 966 1101 IPR001063 GO:0003735|GO:0005840|GO:0006412
Tsu02g01203 1122 Gene3D Ribosomal protein L22/L17 951 1122 IPR036394 GO:0003735|GO:0005840|GO:0006412
Tsu02g01203 1122 SUPERFAMILY Zn-dependent exopeptidases 42 331 - -
Tsu02g01203 1122 PANTHER BNAA07G25020D PROTEIN 7 860 - -
Tsu02g01203 1122 CDD M28_Fxna_like 49 368 - -
Tsu02g01203 1122 Pfam Ribosomal protein L22p/L17e 967 1102 IPR001063 GO:0003735|GO:0005840|GO:0006412
Tsu02g01203 1122 Pfam Peptidase family M28 131 321 IPR007484 -
Tsu02g01203 1122 Gene3D Zn peptidases 46 347 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g01203 Tsu-Chr2 10124971 10137541 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g01203 951 1121 Cytoplasmic Ribosomal Protein Gene Family AT1G27400 88.889 2.35e-107 331
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g01203 - - gmx:100796569 1448.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g01203 02 10124971 10137541 Tsu02g01203 02 10124971 10137541 ECH
Tsu07g02718 07 31816005 31818092 Tsu02g01203 02 10124971 10137541 PCT