Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g01196 ATGGACTGGAATGCAAAATCTCCCTCTTCAAGGTGGGAGTGGGAGATGGATCACCAATCATTTTCCAATGCAAAAGCAACTGAAAGCCCGAAATTTCAACCACCAAACTGGACGGTCGAATTAGACCAAGAAAACAATGTTGGTTTGTTCGATACGCCTGGTGGAAGTGGTTCTTCTGGCTCTGAGCTAATTCTCGGTTCTACGTCAAGGAGTTCAAAATCAGCTTCAATTGGTTCATCATCAAATAGGGACAGCAAAACCATAGAATATCCAATTGAAAGTTCTCGTGCACCGGAGCTTTCTTCTGTCTCTGGTGAACAATTGCTCACTCTAAGACTTGGTAAAAGAATGTACTTTGAGGATGTATCTCCCGAAAATGATTCGGAATACCTATCTTTTTCAAGGGATCTCATGTCATCTTTAAGTGTTGGAAAGAAATGTAAGTCCAATGGTCAGAACTTACAATCTCCGTGCTGCCAGGTTGAAGGTTGTGGGCTTGACCTTTCATTGGCTAAAACTTATCATCGCAAACATAGAGTTTGTGAAATTCATTCCAAATCTCCTAAGGTGGTTGTAGCTGGTTTGGAAAGTCGATTTTGCCAGCAATGTAGCAAGTTCCATGATCTGtttgaatttgatgaagaaaAGAGAAGCTGCAGACGACGTCTTTCACATCACAATGCAAGGCGTCGTAAATACCGTCCTACTGATGCTGTCCAGTCAAGTAAATCAGCTTTGACTTCCTCACGACGTGATGGGAAGCGACAGATGAATCCATTTGCTTATTCAAAGACCGATAAAAATTTAGCCTTGCAAAACAAACACAACAGCAAGTTCCCCCAAGCAAAAGATTTTCTCTTGAAGCCTTCAAAATACAACACTGACATACCAAGTTCCCTCGCTATGCTTTCTGATGATTCCAATGTCCATTTTACTTGCAAAGCCCTTGAAACCAAGAGTATCAGTCCAGGTATAGAAGATTTCCTTACCTATGCTACACAAGACATTACTTGTGCTCTCTCTCTTCTGTCAACCAATCCGTGGGATTCATATGAGACTAAATCCATTTCTCTAGAACATTCTCATCGCACTACCAGTAATGCTCAAGCCATAACGCATGCAATGAATCTGCGCATGCCTCTTGCTTCATCAGAATCATGGTATAGTGATCATGATCAACATGCGAATTCCAGTATGTGGATCTCAAACTCAAACTGTGAAGATAGTAGTCACTTTCCATCTTATGATTTCTGA 1254 0.4091 MDWNAKSPSSRWEWEMDHQSFSNAKATESPKFQPPNWTVELDQENNVGLFDTPGGSGSSGSELILGSTSRSSKSASIGSSSNRDSKTIEYPIESSRAPELSSVSGEQLLTLRLGKRMYFEDVSPENDSEYLSFSRDLMSSLSVGKKCKSNGQNLQSPCCQVEGCGLDLSLAKTYHRKHRVCEIHSKSPKVVVAGLESRFCQQCSKFHDLFEFDEEKRSCRRRLSHHNARRRKYRPTDAVQSSKSALTSSRRDGKRQMNPFAYSKTDKNLALQNKHNSKFPQAKDFLLKPSKYNTDIPSSLAMLSDDSNVHFTCKALETKSISPGIEDFLTYATQDITCALSLLSTNPWDSYETKSISLEHSHRTTSNAQAITHAMNLRMPLASSESWYSDHDQHANSSMWISNSNCEDSSHFPSYDF 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g01196 417 MobiDBLite consensus disorder prediction 1 88 - -
Tsu02g01196 417 MobiDBLite consensus disorder prediction 14 88 - -
Tsu02g01196 417 MobiDBLite consensus disorder prediction 221 258 - -
Tsu02g01196 417 ProSiteProfiles Zinc finger SBP-type profile. 156 233 IPR004333 GO:0003677
Tsu02g01196 417 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 2 24 404 - -
Tsu02g01196 417 SUPERFAMILY SBT domain 157 236 IPR036893 GO:0003677|GO:0005634
Tsu02g01196 417 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 24 404 IPR044817 GO:0003677
Tsu02g01196 417 MobiDBLite consensus disorder prediction 238 254 - -
Tsu02g01196 417 Gene3D - 149 220 IPR036893 GO:0003677|GO:0005634
Tsu02g01196 417 Pfam SBP domain 159 232 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g01196 Tsu-Chr2 10012404 10014545 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g01196 1 373 SBP-box Gene Family AT5G43270 37.469 2.69e-51 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Tsu02g01196 SBP 1.4e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g01196 - - mtr:MTR_8g080670 474.167