Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g01192 ATGACAATATCTACTGGTTTGGAGTACGATATTAATGATTTGTATCAAGAAGCTCAAAGGAGATGGTTGAAGCCTGCAGAAGTGATGTACATTTTACAGAATCATGAACAGTATCAGTTCACTCAAGAGCCCCCGCAACAGCCCACAAGTGGTTCCCTGTTTCTGTTTAACAGAAGAGTACTGCGTTTCTTCCGTAGAGATGGTCATGCCTGGCGGAAGAAAAGAGATGGAAGAGCTGTAGGAGAAGCCCACGAACGGCTGAAGGTTGGAAATGTTGAAGCCATAAATTGTTACTATGCACATGGAGAGCAGAACCCTACTTTCCAGAGGCGGAGCTATTGGATGTTGGACCCGGCATTTGACCATATTGTTCTCGTGCATTACAGAGACACAAGTGAGGGAAGGCTCAGTTCTGGACCTGGTACACAATTGTCACCGGGTGCTTCTTCTGCATACAGTCAGAGTCCTAGCTCATATAGTAATCATAACCCAACTTCCATTGTTGGTGATTCATATGAACCTAATCAGAGTTTCTCTAGTCCTGTATCTGCTGAAGTTACCTCTGATAACAATGGAATGAGTCACTTGGATGGAACAGAAGCAGAATCTGGAACCTCAGCTGACATTAAGATTACTCAAGTTTTGCGCCGATTGGAGGTTCAGTTAAGTTTGAATGAGGACAACATCGAAGAAATTGCTCCCTTCCGCAATGAGCATGAAGTCACCCATGATTCAATAGCACAGAACCATCAAGCGGTGATCTGCAAGCAAGAGGAGTCTGCTGCTCTTTCTGGACCAGATGATCAAGGGCTATTATATGATGGATATAATGGAAGGCAAGGTGATAATGGTGAAAGTTATGGTGAATTACTAGACTATGATTTCCCTGATGGAAATGAAAAGGCTTTATCATGGAACAATGTATACATTCCAGCTGGGAATCAGGAGAGTTCACCATCTTCTTCAATAAGGGAACCAGTTACCAACCTGGAAGACAGTTGCTGGGCAAATTTCAACACAAATAATGATGGAAACTCTGTTTTCTCCCTACCTCAAGCTGTTGGTGGAGTCACACTTCCTCCATATTCTTCTATGGCAGAAACACAAGAAACTAGTTCTGGTTACTATGCGACATTGTTTAACCCAAGCCAAGTCGGAGCATCTCATGATGCAGGTTCAAGCTTAACTGtttcacaaaaacaaaattttaccATAAAGGCAGTCTCCCCGGGATGGGGTTATGCCTCTGAGACTACAAAGGTTTACATTATTGGGTCTTTTCTCTGTCATCCTTCCAATTCTGCTTGGGCCTGTATGATTGGTGATGTTGAAGTTCCTGTGGACATAATTCAGGATGGTGTAATTTGTTGTGAAGTTCCATCTCATATTCCTGGAAAGGTTACTCTGTGCATTACATCTGGAAACCGGGAGTCTTGCAGTGAAGTAAGAGAATTTGAGTATCGTGATAAGACTGAGAGTTGCACCCACTATACTCCGCCGGAAACCGAAGACAGCAGAACTCCAGACGAGCTGTTATTACTTGTTAGATTTGGGCAAATGCTCCTTTCTGCGTCGTCTGTAAGTAATGATAACAACGAATCGGGAATTTTCATAAAACAGAAAGCTGATGATAATTCATGGAGCCATATTATAGAGGCTCTTTTATTTGGCAGTGGAACTTCTTCTGGTACTATCAATTGGCTTCTTGAAGAGCTTTTAAAGGATAAGCTACAGGTGTGGCTTACGTGTAGATCCCGGGAAATAGATGAAGAGGCAGGCTGCTCTTTGTCCAAGAAAGAGCAAGGAATTATTCACATGGTTGCTGGGTTGGGTTTTGAGTGGGCCTTGAACCCTATTCTCAGTTGTGGTGTGAATATTAATTTCCGTGACATCAATGGGTGGACTGCCCTTCATTGGGCTGCACGTTTTGGAAGAGAAAAAATGGTTGCGTCGCTTATAGCTTCTGGTGCATCTGCTGGAGCTGTAACAGATCCAAGTGCACAAGATCCAACTGGTAAAACTGCAGCATCAATTGCATCTAGCAGTGGGCATAAGGGACTGGCAGGGTATCTTTCAGAGGTAGCTCTAACAAGCCATCTGTCATCGCTTACACTGAAAGAGAGTGAGCTGTCTAAAAGTTCTGCGGAGCTTCAAGCAGATTTAACTGTTAGTAATGTCTCCAaggaaaatattgttttcaatGAGGATCGGGCCTCGCTTAAAGATTCCTTAGCTGCTGTCAGAAATACAACTCAGGCAGCTGCACGGATACAAGCTGCTTTTCGTTCACATTCATTTAGAAAACAGAGAGCAAAAGAAACAAATGCGGTTATGAGAGGACATGATATCAGTGCAAGTAGCATTGGTGACATGCCAGAGCTTTATGCTATGTCAAAACTTGCCTTTCGGAACTCGCGTGAAAACAATTCAGCTGCATTATCAATTCAGAAGAAATATCGAGGTTGGAAAGGTCGCAAAGATTTCCTATCATTGCGCCAAAAAGTAGTGAAGATACAGGCTCATGTGAGGGGTTACCAAGTTAGGAAGCATTACAAAGTATTATGGGCAGTTGGAATCTTGGACAAGGTTGTGCTAAGATGGCGTAGAAAAGGAGTTGGTTTACGAGGTTTCAAACCAGAGGTGGAGGttaatgaaaatgaagatgaagatgaagatattCTCAAGGTGTTCCGAAAACAGAAAGTAGATGGCGAAATTGACAAGGCTGTCTCAAGGGTGCTGTCCATGGTCAAATCTCCTGATGCTCGTGAGCAATATCATCGCATGCTTGAGAAGTATCGTCAAGCCAAGGCTGAACTTGCACAAACGAGTGAAGAAAAATCGTTAACAACTTCTATAGAAGATTATTTGAACATGGATGatgatttttattaa 2895 0.4207 MTISTGLEYDINDLYQEAQRRWLKPAEVMYILQNHEQYQFTQEPPQQPTSGSLFLFNRRVLRFFRRDGHAWRKKRDGRAVGEAHERLKVGNVEAINCYYAHGEQNPTFQRRSYWMLDPAFDHIVLVHYRDTSEGRLSSGPGTQLSPGASSAYSQSPSSYSNHNPTSIVGDSYEPNQSFSSPVSAEVTSDNNGMSHLDGTEAESGTSADIKITQVLRRLEVQLSLNEDNIEEIAPFRNEHEVTHDSIAQNHQAVICKQEESAALSGPDDQGLLYDGYNGRQGDNGESYGELLDYDFPDGNEKALSWNNVYIPAGNQESSPSSSIREPVTNLEDSCWANFNTNNDGNSVFSLPQAVGGVTLPPYSSMAETQETSSGYYATLFNPSQVGASHDAGSSLTVSQKQNFTIKAVSPGWGYASETTKVYIIGSFLCHPSNSAWACMIGDVEVPVDIIQDGVICCEVPSHIPGKVTLCITSGNRESCSEVREFEYRDKTESCTHYTPPETEDSRTPDELLLLVRFGQMLLSASSVSNDNNESGIFIKQKADDNSWSHIIEALLFGSGTSSGTINWLLEELLKDKLQVWLTCRSREIDEEAGCSLSKKEQGIIHMVAGLGFEWALNPILSCGVNINFRDINGWTALHWAARFGREKMVASLIASGASAGAVTDPSAQDPTGKTAASIASSSGHKGLAGYLSEVALTSHLSSLTLKESELSKSSAELQADLTVSNVSKENIVFNEDRASLKDSLAAVRNTTQAAARIQAAFRSHSFRKQRAKETNAVMRGHDISASSIGDMPELYAMSKLAFRNSRENNSAALSIQKKYRGWKGRKDFLSLRQKVVKIQAHVRGYQVRKHYKVLWAVGILDKVVLRWRRKGVGLRGFKPEVEVNENEDEDEDILKVFRKQKVDGEIDKAVSRVLSMVKSPDAREQYHRMLEKYRQAKAELAQTSEEKSLTTSIEDYLNMDDDFY 964
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g01192 964 Gene3D - 807 856 - -
Tsu02g01192 964 Gene3D - 516 697 IPR036770 -
Tsu02g01192 964 ProSiteProfiles IQ motif profile. 808 837 IPR000048 GO:0005515
Tsu02g01192 964 ProSiteProfiles IQ motif profile. 750 779 IPR000048 GO:0005515
Tsu02g01192 964 Coils Coil 923 946 - -
Tsu02g01192 964 Pfam IPT/TIG domain 404 487 IPR002909 -
Tsu02g01192 964 ProSiteProfiles IQ motif profile. 831 856 IPR000048 GO:0005515
Tsu02g01192 964 Pfam CG-1 domain 17 130 IPR005559 GO:0003677
Tsu02g01192 964 ProSiteProfiles CG-1 DNA-binding domain profile. 11 137 IPR005559 GO:0003677
Tsu02g01192 964 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 7 959 - -
Tsu02g01192 964 SMART ANK_2a 632 661 IPR002110 GO:0005515
Tsu02g01192 964 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 752 855 IPR027417 -
Tsu02g01192 964 MobiDBLite consensus disorder prediction 135 205 - -
Tsu02g01192 964 MobiDBLite consensus disorder prediction 132 205 - -
Tsu02g01192 964 SUPERFAMILY Ankyrin repeat 599 693 IPR036770 -
Tsu02g01192 964 SMART CG_1_2 14 132 IPR005559 GO:0003677
Tsu02g01192 964 ProSiteProfiles Ankyrin repeat profile. 632 664 IPR002110 GO:0005515
Tsu02g01192 964 Gene3D Immunoglobulins 397 493 IPR013783 -
Tsu02g01192 964 SUPERFAMILY E set domains 404 488 IPR014756 -
Tsu02g01192 964 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 4 7 959 - -
Tsu02g01192 964 Pfam Ankyrin repeats (3 copies) 614 692 IPR002110 GO:0005515
Tsu02g01192 964 ProSiteProfiles Ankyrin repeat region circular profile. 632 658 - -
Tsu02g01192 964 SMART iq_5 830 852 IPR000048 GO:0005515
Tsu02g01192 964 SMART iq_5 807 829 IPR000048 GO:0005515
Tsu02g01192 964 SMART iq_5 749 771 IPR000048 GO:0005515
Tsu02g01192 964 Pfam IQ calmodulin-binding motif 833 852 IPR000048 GO:0005515
Tsu02g01192 964 Pfam IQ calmodulin-binding motif 810 828 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g01192 Tsu-Chr2 9981470 9989515 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g01192 7 943 CAMTA Transcription Factor Family AT1G67310 52.033 0.0 884
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Tsu02g01192 CG-1 1.4e-48 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g01192 K21596 - gmx:100786880 1435.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g01192 02 9981470 9989515 Tsu02g01192 02 9981470 9989515 ECH
Tsu07g02681 07 31335282 31345850 Tsu02g01192 02 9981470 9989515 PCT