Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tsu02g01190 | ATGGGAAGAGGAAGAGTTGAGTTGAAGAGAATTGAGAACAAAATCAACAGACAAGTTACCTTCGCTAAACGTAGAAACGGGCTTTTGAAAAAAGCTTATGAGCTTTCTGTTCTTTGTGATGCTGAAGTTGCTCTTATCATCTTCTCCAATAGAGGAAAATTGTACGAGTTTTGCAGCAGTTCAAGCATGCTCAAAACACTAGAGAGGTATCAGAAATGCAACTATGGTGCACCTGAGACTAATGTGTCTGCACGAGAAGCCTTGGAGTTAAGCAGTCAACAGGAATATTTGAAGCTGAAAGCACGTTATGAAGCATTACAAAGGTCCCAGAGGAACCTTATGGGAGAAGATCTTGGCCCTTTGAGCAGTAAAGAGCTAGAGACGCTTGAAAGGCAGCTAGATTCGTCCTTGAAGCAAATAAGATCAACAAGGACACAATTCATGCTGGATCAGCTCTCTGATCTTCAACGCAAGGAACATATGCTAAGTGAGGCTAACAGGTCCCTCAGACAAAGGCAGTTGGAGGGGTATCAATTGAATCAACTACAAATGAATGCTTGTGTTGAAGAAATGGGCTATGGTAGGCATCCAAGTCAACCTCAAGGTGATGGACTCTATCAACAATTGGAGTGTGAGCCAACATTACAAATTGGTTATCAGGCCGATCCAGGGTCAGTGGTTACGGCAGGCCCAAGCATGAGTAATTACATGGGGGGATGGTTACCATAG | 729 | 0.4335 | MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPETNVSAREALELSSQQEYLKLKARYEALQRSQRNLMGEDLGPLSSKELETLERQLDSSLKQIRSTRTQFMLDQLSDLQRKEHMLSEANRSLRQRQLEGYQLNQLQMNACVEEMGYGRHPSQPQGDGLYQQLECEPTLQIGYQADPGSVVTAGPSMSNYMGGWLP | 242 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tsu02g01190 | 242 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677|GO:0046983 | |
Tsu02g01190 | 242 | Gene3D | - | 13 | 83 | IPR036879 | GO:0003677|GO:0046983 | |
Tsu02g01190 | 242 | Pfam | K-box region | 91 | 172 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Tsu02g01190 | 242 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677|GO:0046983 | |
Tsu02g01190 | 242 | Coils | Coil | 126 | 146 | - | - | |
Tsu02g01190 | 242 | CDD | MADS_MEF2_like | 2 | 76 | IPR033896 | GO:0000977|GO:0045944 | |
Tsu02g01190 | 242 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 1 | 226 | - | - | |
Tsu02g01190 | 242 | Coils | Coil | 152 | 172 | - | - | |
Tsu02g01190 | 242 | ProSiteProfiles | K-box domain profile. | 89 | 185 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Tsu02g01190 | 242 | SUPERFAMILY | SRF-like | 2 | 77 | IPR036879 | GO:0003677|GO:0046983 | |
Tsu02g01190 | 242 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | IPR002100 | GO:0003677|GO:0046983 | |
Tsu02g01190 | 242 | ProSitePatterns | MADS-box domain signature. | 3 | 57 | IPR002100 | GO:0003677|GO:0046983 | |
Tsu02g01190 | 242 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677|GO:0046983 | |
Tsu02g01190 | 242 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677|GO:0046983 | |
Tsu02g01190 | 242 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677|GO:0046983 | |
Tsu02g01190 | 242 | PANTHER | AGAMOUS-LIKE MADS-BOX PROTEIN AGL9 HOMOLOG | 1 | 226 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Tsu02g01190 | Tsu-Chr2 | 9960331 | 9965923 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Tsu02g01190 | 1 | 242 | MADS-box Gene Family | AT1G24260 | 72.874 | 8.86e-115 | 327 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | MADS-MIKC | Tsu02g01190 | K-box | 3.4e-27 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tsu02g01190 | - | - | gmx:100805078 | 444.121 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Tsu02g01190 | 02 | 9960331 | 9965923 | Tsu02g01190 | 02 | 9960331 | 9965923 | ECH | |
Tsu07g02493 | 07 | 28591162 | 28594969 | Tsu02g01190 | 02 | 9960331 | 9965923 | PCT |