Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g01183 ATGGGAGCACTTAGCACATACTATAACTATAATTGTTACCCTTACCAACCTCATCAAACTAACAACAATTCAGAAATCATCACTTTTCAACATCATGAATATCatgaacaagaacaacaacaatcaTTACCTCAGTTATCACAAATTTCAGAACATAATAACCACCATTTTTCTTCTTACTTAGATGAAACCTTGTTTTTTCAAAGtccatatttttactcaaacGAGACTTACCCTTTTCATGAACAATTACTTGTTGACACCACTTTCTCTTCTCAAAATGATGGCTTCATTTCAATGAATGATATTTTCTCAAATGAAGAAAATTTCAACACTTACCTTCCATGCACAAAACGACAAAAACTATGTTATGAGGAGAAAAAAGTACAACAACAAGAAGAGCTTTTGAACTCAACCAATTTTTTTGTGGATGAGTTCATTACTAACCCTTTTGTTTCCTTTGAAGCAGAACAAAAATATTGTTCTGCTTCGAAAATTGTTGATGGTGTTGGTTGTGAAATGAAAGTGAACGAAAAGACTATCTCGGCGCAGAGTATTGCAgcgagagaaagaagaagaaagataacTGAGAAGACACAAGAGCTTGGGAAGTTGGTTCCTGGTGGCTCTAAGATGAACACAGCAGAGATGTTTAATGCTGCTGCTAATTATGTTAAGTTTCTTCAAGCTCAAGTTGGAATGCTTCAAGTTATGGGAACATTAAGCAAGGAAGAAAAGGAACCTCCTCCAAGTGAAGATCTACACAAACTACTTGTTTCTCCTTTTGTTCAAGAAAAGTTGTATTTGGAAGAAAAGTGCTTTGTTCCAAAAGATTTTGTCACCACATTAACCAATAATGATGATGTTAGATCAAAACCTACCATCCTTAAGGGTCTTAAGCAGCTTATTGGAACAGAGATTAATGAGAAGAAACCAAAGCAAGAATAA 948 0.3228 MGALSTYYNYNCYPYQPHQTNNNSEIITFQHHEYHEQEQQQSLPQLSQISEHNNHHFSSYLDETLFFQSPYFYSNETYPFHEQLLVDTTFSSQNDGFISMNDIFSNEENFNTYLPCTKRQKLCYEEKKVQQQEELLNSTNFFVDEFITNPFVSFEAEQKYCSASKIVDGVGCEMKVNEKTISAQSIAARERRRKITEKTQELGKLVPGGSKMNTAEMFNAAANYVKFLQAQVGMLQVMGTLSKEEKEPPPSEDLHKLLVSPFVQEKLYLEEKCFVPKDFVTTLTNNDDVRSKPTILKGLKQLIGTEINEKKPKQE 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g01183 315 PANTHER TRANSCRIPTION FACTOR BHLH52-RELATED 2 300 - -
Tsu02g01183 315 Gene3D - 178 247 IPR036638 GO:0046983
Tsu02g01183 315 SMART finulus 185 234 IPR011598 GO:0046983
Tsu02g01183 315 Pfam Helix-loop-helix DNA-binding domain 185 229 IPR011598 GO:0046983
Tsu02g01183 315 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 2 300 - -
Tsu02g01183 315 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 181 237 IPR036638 GO:0046983
Tsu02g01183 315 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 179 228 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g01183 Tsu-Chr2 9902269 9904853 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g01183 139 307 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G30670 42.690 2.53e-30 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tsu02g01183 HLH 0.00018 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g01183 - - mtr:MTR_1g060700 424.861