Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g01171 AACTACATTGCCCAGTTACAACAGCTACTCTAGTCTATTGTGATAATGTGAGTGCAGTTTATCTATCCGGCAACCCAGTTCAACATCAGCGAACCAAACACATCGAGATGGATATGCATTTTGTGCGTGAAAAAGTTGCTCGTGGCCAAGTACGAGTCTTACATGTTCCCTCTCGTTACCAGATTGCTGACATATTCACCAAAGGACTTCCCACCCTTGTTACAGAGATTGTGAAAGACATTGTGAAAAAATTGAATCGTTGTGTCTCAAGTGATTATGAAGGAATGACTGGAATTGACATGCATATTGAACAAATTCAATCCTTGTTGCACCTCGAGTTACCGACTGTTCGAATCATAGGAATATGGGGAATGGGAGGGATAGGCAAAACAACAATTGCCAATGCAATCTTTGGGAAACTTGCAACTCAGTTCAATGCTGATCAACTTAAAGATTTAATTGGAACACATCCTAAGTTTGGCCAGGGGAGTAGAATCATTGTGACTAGTAGAGACAGGCAAGTGCTTGAGAATGTCAATGCTGATGAAATATATAAAGTTAGGGAAATGGATAAACAAGATTCTCTACAACTCTTCTGTTTATTTGCCTTTAAAAAAAACCATCCAATAGAACCTTATGTGAGCTTATCAAAAAAGGTATTAGATTATGCTAAAGGGGTTCCGTTGGCTCTCAAAGTTTTGGGCTTATTGCTTCATGGCAGAACaaaggaagcatgggaaagcCAGTTGCAAAAGCTCGAAAAGCTTCCCGATCTTAAAATTTTCAGATTGTTGAAGTTAAGTTATGATGGACTTGACGACGATCAAAAGGATATTTTTCTTGACATAGCATGCTTCTATAGAGGAGAATTTGAGAAAGTTGTAGAACAATCATTAGATTGTTGTGGCTTCTCCGGTCGCATTGGAATGGACGTTCTTGAAGATAGGTGCCTTATATCTATTTCAAAAGGTAGAGTTTGGATGCATGATCTAATACAAGAAATGGGATATGAAATCGTTCGGCTTGAATGTATCAATAATCCTGGAAAACGGAGTCGATTATGCAAGCCTGACAATATTTATGATGTTTTAAGTAAGAACAAGGGAACAGATGCAATCCAAGGTATATTCCTGAACATGgagaaaataaagaaagttCAACTACATGCTGATACATTCAAGAAAATGCATAATCTTAGGATGATCCGGTTCTATAATCATTATGCATTTTTATGTTACTCAAGTGTGATCCCATGTTCATTTCTTAAGAGTCTTCCAGatgatttaaaatttcttcgTTGGGATTGCTTCCCTCAAAGATCTTTGCCGCTAGACTTTTCCCCAAAAAATCTTGTTACACTTGATATGTCTTATAGCAATCTTCAACAACTTTGGGAGGGAGATCAGGCTTTACCAAATTTGAAAAGGCTTAACCTTAGAAATTCTAAGATGCTCAAAGGACTACCGGACCTCTCTTTGTCTCCAAATGTTGAAGAAGTAATTCTTAGTGGTTGTGTAAGTTTGATACATGTTTACTCCTCTAGCTTCCTCGACAAGCTTAACTGGTTATGTTTAGATGGTTGTACCAAACTCGAGAGTTTAAAGATTCATAGCAATATTCTATCAAGATCATCTGGATTAGTTGCTCTCCATGGTTGTCACAACCTTCAAATGCTTTTAATCAGCAGTAGAACTGATGTGGTTCAATCATACAATTGGCCTCCTTTTAATCGAAGTCCTGTCAACATATCAGTAAGagtttttaatgataaaatggTATTACACTGTGATGATGAGGGGGGTTACAAGATTTATGGTGACGATTCATGTATCAATGAGTTTTGCTGGTTGGATATTTCGAATTGTGAGTCCCTAACATGCCTACCAGCTGAACTTTTAAATTTGAAGTTTCTAACAAGACTATGTCTTCGCGGTTGTTTAAAGTTGGAGAAGTTACCTGAAATCGAGGAGACTATGGAAAATCTAAAAGTGCTCATCTTAGACGAAACATCAATANTATACGAAATCAGCAGTAGAACTGATGTGGTTCAATCATACAATTGGCCTCCTTTTAATCGAAGTCCTGTCAACATATCAGTAAGagtttttaatgataaaatggTATTACACTGTGATGATGAGGGGGGTTACAAGATTTATGGTGACGATTCATGTATCAATGAGTTTTGCTGGTTGGATATTTCGAATTGTGAGTCCCTAACATGCCTACCAGCTGAACTTTTAAATTTGAAGTTTCTAACAAGACTATGTCTTCGCGGTTGTTTAAAGTTGGAGAAGTTACCTGAAATCGAGGAGACTATGGAAAATCTAAAAGTGCTCATCTTAGACGAAACATCAATAAAAGAACTACCTTCATCCCTGTACCGTTTGGTCGGGCTTGAAGAATTAAGCTTGTAA 2417 0.3637 LHCPVTTATLVYCDNVSAVYLSGNPVQHQRTKHIEMDMHFVREKVARGQVRVLHVPSRYQIADIFTKGLPTLVTEIVKDIVKKLNRCVSSDYEGMTGIDMHIEQIQSLLHLELPTVRIIGIWGMGGIGKTTIANAIFGKLATQFNADQLKDLIGTHPKFGQGSRIIVTSRDRQVLENVNADEIYKVREMDKQDSLQLFCLFAFKKNHPIEPYVSLSKKVLDYAKGVPLALKVLGLLLHGRTKEAWESQLQKLEKLPDLKIFRLLKLSYDGLDDDQKDIFLDIACFYRGEFEKVVEQSLDCCGFSGRIGMDVLEDRCLISISKGRVWMHDLIQEMGYEIVRLECINNPGKRSRLCKPDNIYDVLSKNKGTDAIQGIFLNMEKIKKVQLHADTFKKMHNLRMIRFYNHYAFLCYSSVIPCSFLKSLPDDLKFLRWDCFPQRSLPLDFSPKNLVTLDMSYSNLQQLWEGDQALPNLKRLNLRNSKMLKGLPDLSLSPNVEEVILSGCVSLIHVYSSSFLDKLNWLCLDGCTKLESLKIHSNILSRSSGLVALHGCHNLQMLLISSRTDVVQSYNWPPFNRSPVNISVRVFNDKMVLHCDDEGGYKIYGDDSCINEFCWLDISNCESLTCLPAELLNLKFLTRLCLRGCLKLEKLPEIEETMENLKVLILDETSIXYEISSRTDVVQSYNWPPFNRSPVNISVRVFNDKMVLHCDDEGGYKIYGDDSCINEFCWLDISNCESLTCLPAELLNLKFLTRLCLRGCLKLEKLPEIEETMENLKVLILDETSIKELPSSLYRLVGLEELSL 804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g01171 804 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 147 562 - -
Tsu02g01171 804 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 68 145 - -
Tsu02g01171 804 Gene3D - 73 149 IPR027417 -
Tsu02g01171 804 CDD RNase_HI_RT_Ty1 1 71 - -
Tsu02g01171 804 Pfam Leucine Rich Repeat 449 468 IPR011713 -
Tsu02g01171 804 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 89 282 IPR027417 -
Tsu02g01171 804 Gene3D - 188 272 IPR042197 -
Tsu02g01171 804 Pfam NB-ARC domain 153 254 IPR002182 GO:0043531
Tsu02g01171 804 PRINTS Disease resistance protein signature 118 133 - -
Tsu02g01171 804 PRINTS Disease resistance protein signature 468 484 - -
Tsu02g01171 804 SUPERFAMILY L domain-like 730 804 - -
Tsu02g01171 804 SUPERFAMILY "Winged helix" DNA-binding domain 259 363 IPR036390 -
Tsu02g01171 804 Gene3D Ribonuclease Inhibitor 723 804 IPR032675 -
Tsu02g01171 804 Gene3D Ribonuclease Inhibitor 608 678 IPR032675 -
Tsu02g01171 804 Gene3D Ribonuclease Inhibitor 363 573 IPR032675 -
Tsu02g01171 804 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 147 562 IPR044974 GO:0006952
Tsu02g01171 804 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 68 145 IPR044974 GO:0006952
Tsu02g01171 804 SUPERFAMILY L domain-like 385 677 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g01171 Tsu-Chr2 9799804 9804332 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g01171 616 802 WRKY Transcription Factor Family AT4G12020 34.211 2.49e-10 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g01171 - - gmx:100814075 590.112