Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g01162 ATGCAATCCTTCAAGTTACGCACGCTTCTTTTTTATCCTCCTCCTTTCACTTCTAACTCATTTCAATCCTTTCTCTGTTCATTTTCCACCACTGCTTTATCATCCTCTAAAACCCAATACTCAAAAGAAACCACTTCTCTATATAACTTCCTTAATTCCAATGCCAAATTACCTAAATCACAGTCCATTTTTATCTCGAAACGTGCTTCGAGAGCCACATTCCCTCAAAGGCCCTTGTCTGTCATCAACTTTTTCGAACAAAATGGATTTTCCGAAACTCAGATTCACACTATCGTTCGTCAGAGAGTTCAATTATTGTTTTCAGATGTTGATAAAACTCTGAAACCTAAATTTGAGCTCTTTCGGCAATTGGGTTTTGAGGGTTCGGATTTACGTGACTTTATTTCCAAGCATCCAACTGTTTTGACTGCTAGTTTGAACAAAACATTGGTTCCGTCTGTGGAAGCTATTAAGAAAATTGTATGGAATGATAAAGAGCGTATTCAAGTTTTGTCTAAATGTGGCTGGATACTCCCAAAGTACCAATTATTTGTTGCCAATGTTGCTTTCTTAGAGAGTTTTGGCATTGTCGGGGATCAGGTTGTGATTCTACTCAAACGACATTCAAGACTTTTGGTTTCATCGAAAGCTACTATTAGAAAGTATGTTTTGCAAGCTGAAGAATTGGGtttcaatcaaaattcaagaaTGTTGATTCATGGACTTCATACGATATGTGCTTTGAGCcataaaacatttaagaaaaaGCTGGATTTAATTCAGTGTTTTGGGTTTTCGAAAGATGAGAGCATGCTTATGTTCAAAAGGGCTCCAGCTTTGCTTAGGACATccgagaaaaaattaaaggttgGAATTGAATTCTTCTTACATACAGTTATGCTGCCAAAGTCAATATTGGTTAATCGGCCTGTGATTTTGATGTATAGCATCGAGGATCGAGTGTTTCCTCGATATAGAGTTTTTCAGCTTTTGAAATCACAAAATCTATGTAAGAAGGGTCCAAGCTTTGTTTCAATGTTATGTTATTCTGAGGACATGTTCTTGGACAAGTTTTTATCAAAGTTTAAAGAAAATGCAGAGGCATTATTGATAGCTTACAAGGGGCATCTTCTGGAAGCGTAA 1143 0.3543 MQSFKLRTLLFYPPPFTSNSFQSFLCSFSTTALSSSKTQYSKETTSLYNFLNSNAKLPKSQSIFISKRASRATFPQRPLSVINFFEQNGFSETQIHTIVRQRVQLLFSDVDKTLKPKFELFRQLGFEGSDLRDFISKHPTVLTASLNKTLVPSVEAIKKIVWNDKERIQVLSKCGWILPKYQLFVANVAFLESFGIVGDQVVILLKRHSRLLVSSKATIRKYVLQAEELGFNQNSRMLIHGLHTICALSHKTFKKKLDLIQCFGFSKDESMLMFKRAPALLRTSEKKLKVGIEFFLHTVMLPKSILVNRPVILMYSIEDRVFPRYRVFQLLKSQNLCKKGPSFVSMLCYSEDMFLDKFLSKFKENAEALLIAYKGHLLEA 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g01162 380 Pfam mTERF 82 233 IPR003690 GO:0003690|GO:0006355
Tsu02g01162 380 Pfam mTERF 183 354 IPR003690 GO:0003690|GO:0006355
Tsu02g01162 380 Gene3D Transcription termination factor 3, mitochondrial 182 366 IPR038538 -
Tsu02g01162 380 Gene3D Transcription termination factor 3, mitochondrial 46 181 IPR038538 -
Tsu02g01162 380 PANTHER CGI-12 PROTEIN-RELATED 29 376 IPR003690 GO:0003690|GO:0006355
Tsu02g01162 380 PANTHER EMB|CAB62602.1 29 376 - -
Tsu02g01162 380 SMART mt_12 236 266 IPR003690 GO:0003690|GO:0006355
Tsu02g01162 380 SMART mt_12 96 127 IPR003690 GO:0003690|GO:0006355
Tsu02g01162 380 SMART mt_12 132 163 IPR003690 GO:0003690|GO:0006355
Tsu02g01162 380 SMART mt_12 271 302 IPR003690 GO:0003690|GO:0006355
Tsu02g01162 380 SMART mt_12 202 232 IPR003690 GO:0003690|GO:0006355
Tsu02g01162 380 SMART mt_12 303 334 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g01162 Tsu-Chr2 9619756 9620898 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Tsu02g01162 mTERF 3.2e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g01162 K15032 - zju:107425470 325.479