Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g01161 ATGCATAACCAAGATCAAACAATCACTCCCACTCCAGGAgGGCACGAAAATCATGGAGGAGTTTATGTTTGTCACAAATGTGGATGGCCTTTCCCAAATCCACATCCTAGTCCTAAACACAGACGTGCTCACAAGAAGATCTGTGGAACCATTCAAGGTTACAAACACCAACAAACACAAGgtttgatTGTGTCTGGTTCAAATAATGAGAACAAGGGTAATGATGGAATTGAGGGGAAATTAATTAGGTCAGAAAGTGAGCTGTATTCAGATGCAGTTGCTGATTTTTCAGATAATAATGGACTAAGTCAAGGAATTAAGCAAATTATAGACTCAGGCATTGATTTGGAAAGAGTCAACAACACAAAGGAACATACCCTTTTAGGGTCTTCCGAGTACGACGACTTTAATGCTGCAGATGGGAGTCCATTGATTGCCAACTCAAGCAATGACTGCCaaattaaaaatccaaaaattccGCCATGTGAAAGTTTTGAAGTTGGAAATACAGTTGGGTCGCAAGGTCAATTCCCAGTCTCTGCTGTGGATCCATTAACAAGCTCAATTGCAGATTCAAAGACTGATGAATCGAGTGTTATGCATGGTGATGGTCTTTCTAGTTTGTCAAGTGACTCAAGTCTCAGCAAAGCTACTGTGGATCCATTGGCAAACTCAATTGCAGATTCGGAGACTGAAGAATCGTGTATTGTGCATGGTGATGGTTTTTCTGGTTTGTCAAGTGACTCAAGTCTCAGCAAAGCTGAAGCCGTGCCGGAAGTATTGGCAGAAAAAAATATCTATGCTGGTGAAAATGTGACAGATTCTAGCTTGATATGTGATGAAAAGGAGTCTAATTTGAAAGGAAGCGATGAGGCAAAATCAGAAAGAGACATGGTTGAAATTGTGGAGTCAACTGATAGCATTGTAGGTGATGGAGCTGTTAATCCGAAGGAACATAATAGATCCGAGTTTGTTTCTTTGCAGCCCCAATATGAACTTCCTTTAGAAGTAAACTCGTCAATCACAAACGATGGTCAGTTAGAATCTGCACATGCAATACAGTCTACTACTTGCAGTGAAGTCAAGGAAGACATGAATGTTAATATCGATCCACTTGCCGTGCATGATGATAAACTTGATGTAGCTTATCCTCAGAGTGAGTCATTGAAACATGAGGAAGATGTTAccaatgaaaataattttcaattcaacaCAGGTCAATTGAGTGAAAGGAATCATGTCGTCTCTTCAGATATGCATCTTATGGATAGTAAAATGAAGACGGACTCTGAAGATTGCTCTGAAGTTTCGTTGGTTGAGCTCACAACCGAAACTTATCAAAGATCACATGAAATTGGAGTGTCTATGAAACCTGAGATGAACGAGAATCATTTTTCTGAAGAGCATGGACCTGGTGACATTCATGAAAATTCTCAACTCGAAAGTAGTTTAATGGTTTCATCAAATGAATATCAGAGGGAGATGTCCTTTCAGTCTGCGACCGATGACACattcaacatcatcaataatgACACAGCTGAAATAAATGATGTATCAGTAGATGGAAAGGTTGTAGGAGCTAATGTGGAAAATGACACTGAAGTTATAGTGAAAGATTTCAAATCTAGTGACCTCTTGCAATCAGAAGAGCAATCAAGTGACTTATTTAGGAATAATAGCGATGATGTTGGTGAAACTGGTAAAATTGAAGGTGAAATGAAAAGCaatatcaaattatatgaaGAACATAACAAATCCACTGGTATTGCTGCTGACTCACATGAAGAACAAGATGCACAACTATCAGTGACTGCTGCGGAAAACTCACATGAAGAACAAGATGCACAACTATCAGTGAATGCCGCGGAGGACTTTTCCAGCAAGCATACACCACATTCTTCGACAAATACCGTTCCTTCTGCTCAACTCAATTCTGCTGTTGAAGATGATACTACTGGAGAGCCTGTTCAAGATCAAAGCAATAATAACTTGGTTAAACTTGGTTCATCTGGAATTGATACTTCCGCTGACTCACTTGAAGCGCAAGATGCACAACTATTAGTGAAGGCTATAGAAGACCTTGCGAGCAAGTATACATCAAATTCTTTTATAAATGCTGAGACTTCTGCCATTGAAGATAATTCAGATGAACTGACTAGGGTTACTGCTGTGCCACTGCCTGTTCAAGATCAAACCGTTAATAATTTGACTAAACTAACTTCACCTGGAACTGAGGCTTCGGTTGACTCTAGTAGCCGGCGTGACAGTTTGGATGGTAACTGGGGCTCTAGTTCAGTTATCTCGATGATATCTGATGCACCTGCTGTTCTTGATGGAGAAACCTTATCATCAACCGGTCCGCAGGCATCGACAGAAGCAAGCAAATCAGACGTGAACATCCCACAGGCTGCACCTGCGGATAGACAGCTATCTGGAAAATCAGAAACGTTTGAGCTGCCATCTTTCACAACATTGGTTGAGCCAAGCCATGTGGCTGCTAGTAACGGTGCCACAGCAGCTTCTGAAATCCAGAACCCGCAACAGTCAAATTCCACCTCACAAGCTGCTTTGTTTCCAACTCTAAATCAGGTTATCAATGAGCCTCAAGGCAGAAAGAAGAACGAAGACCTAATCAGCAAGATAACAAAACGAAGCAGCAGTAAAGAGCACACACCTCTGAAGAGTCTCTTGGGTGAGGCCACTCATAGCAGCAGCAAGCCGAAGTCaccaaaaatggaagaaaataataaaggtTCTGGATTGACAACTGTTAACTCTATTCTTGGTCCCGAGTCCCCTTCGGCAGCTCAAAAGGCGAAAGAAAAGGCTGCAAATGAATGGAACTCTCCAGCAAGATATCCTGCAAACatcaagagagaaaaaaagaaattgaagagcAGACCATTTTGGATACAGTTGGTTTGTTGCTCAGCAGTGGATCCTCAGCGGCGGTAG 2955 0.3993 MHNQDQTITPTPGGHENHGGVYVCHKCGWPFPNPHPSPKHRRAHKKICGTIQGYKHQQTQGLIVSGSNNENKGNDGIEGKLIRSESELYSDAVADFSDNNGLSQGIKQIIDSGIDLERVNNTKEHTLLGSSEYDDFNAADGSPLIANSSNDCQIKNPKIPPCESFEVGNTVGSQGQFPVSAVDPLTSSIADSKTDESSVMHGDGLSSLSSDSSLSKATVDPLANSIADSETEESCIVHGDGFSGLSSDSSLSKAEAVPEVLAEKNIYAGENVTDSSLICDEKESNLKGSDEAKSERDMVEIVESTDSIVGDGAVNPKEHNRSEFVSLQPQYELPLEVNSSITNDGQLESAHAIQSTTCSEVKEDMNVNIDPLAVHDDKLDVAYPQSESLKHEEDVTNENNFQFNTGQLSERNHVVSSDMHLMDSKMKTDSEDCSEVSLVELTTETYQRSHEIGVSMKPEMNENHFSEEHGPGDIHENSQLESSLMVSSNEYQREMSFQSATDDTFNIINNDTAEINDVSVDGKVVGANVENDTEVIVKDFKSSDLLQSEEQSSDLFRNNSDDVGETGKIEGEMKSNIKLYEEHNKSTGIAADSHEEQDAQLSVTAAENSHEEQDAQLSVNAAEDFSSKHTPHSSTNTVPSAQLNSAVEDDTTGEPVQDQSNNNLVKLGSSGIDTSADSLEAQDAQLLVKAIEDLASKYTSNSFINAETSAIEDNSDELTRVTAVPLPVQDQTVNNLTKLTSPGTEASVDSSSRRDSLDGNWGSSSVISMISDAPAVLDGETLSSTGPQASTEASKSDVNIPQAAPADRQLSGKSETFELPSFTTLVEPSHVAASNGATAASEIQNPQQSNSTSQAALFPTLNQVINEPQGRKKNEDLISKITKRSSSKEHTPLKSLLGEATHSSSKPKSPKMEENNKGSGLTTVNSILGPESPSAAQKAKEKAANEWNSPARYPANIKREKKKLKSRPFWIQLVCCSAVDPQRR 984
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g01161 984 PANTHER PENTATRICOPEPTIDE REPEAT (PPR) SUPERFAMILY PROTEIN 1 218 - -
Tsu02g01161 984 MobiDBLite consensus disorder prediction 594 617 - -
Tsu02g01161 984 MobiDBLite consensus disorder prediction 915 932 - -
Tsu02g01161 984 MobiDBLite consensus disorder prediction 649 668 - -
Tsu02g01161 984 MobiDBLite consensus disorder prediction 781 798 - -
Tsu02g01161 984 MobiDBLite consensus disorder prediction 778 813 - -
Tsu02g01161 984 MobiDBLite consensus disorder prediction 881 955 - -
Tsu02g01161 984 ProSiteProfiles Zinc finger C2H2 type domain profile. 22 44 IPR013087 -
Tsu02g01161 984 MobiDBLite consensus disorder prediction 736 759 - -
Tsu02g01161 984 PANTHER PENTATRICOPEPTIDE REPEAT (PPR) SUPERFAMILY PROTEIN 207 979 - -
Tsu02g01161 984 MobiDBLite consensus disorder prediction 192 213 - -
Tsu02g01161 984 PANTHER PENTATRICOPEPTIDE REPEAT (PPR) SUPERFAMILY PROTEIN 207 979 - -
Tsu02g01161 984 PANTHER PENTATRICOPEPTIDE REPEAT (PPR) SUPERFAMILY PROTEIN 1 218 - -
Tsu02g01161 984 Coils Coil 984 984 - -
Tsu02g01161 984 MobiDBLite consensus disorder prediction 547 568 - -
Tsu02g01161 984 MobiDBLite consensus disorder prediction 597 617 - -
Tsu02g01161 984 ProSitePatterns Zinc finger C2H2 type domain signature. 24 44 IPR013087 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tsu02g01161 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g01161 - - mtr:MTR_8g081010 1198.34