Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g01152 ATGCTCCAATTCTCTTTCTTCTTAATTTCCATCATCACCGCCACCACCGTCGTCGTCGCCGATAATGACGACGACTCCGCCTTCATGTTAAACCTTCTAAATTCCCTAAAACCACCTCCATCCGGTTGGTCTTCCGATACTCAATTCTGTAAATGGGACGACAAAATCAAGTGCGATTCATCAAACCGCCACGTAACCTCCATAGACCTCTCTTCTCGAAACCTCGCCGGAACCCTACCTTCCAATCTCAACTCTCTCACTCAACTCACAATTCTCAATCTCCAAAACAACAATTTCTCCGGTCCTCTTCCTTCTCTCGCTAACCTCTCCTCTCTCACAATCGCCTATCTCGGTAATAACCAATTCAATGCCGTACCTCCCGCCGCATTTTCCGGCCTAACTTCACTCCAAAACCTTAGCATCAGCAAAAATGATTTTCAACCATGGACATTCCCTTCCGAGTTAACTCAATCTTCCAATCTCAACTaccttgattttgattttgcaaACATCAACGGAACCTTACCGGACATTTTCAACAATTTCACTAGTCTCACCGAACTTCATCTTGCCTACAACAATCTCATCGGAGAATTACCTAATTCTCTTGCCACTTCCTCAATCCAAAAGTTATGGCTCAATAACAACAAATTCGGGTTAACAGGTTCAATCGCCGTGATTGCCAATATGACGCAGTTAACTCAGGTATGGCTTCATGTTAATCAGTTCACTGGTCCAATTCCAGATTTAACGCAATGCACGAATTTGTATGAATTGCTACTTAGGGATAATCACTTAACCGGTTTGGTTCCTGTTTCTCTGTTGAATAATATGCCTAGCTTGCAGACAGTTTCTCTTAGAAATAATGATCTTCAGGGACCTTTTcctgtttttaaaaataaaaatgtgaaatttgaaGCTGATGGGAGAAATCATTTTTGTCTTGGTAATAAAACAGGACCTTGTAATGATATGGTTATGGTTATGCTTCAAATTGCTGGGGGATTTGGGTATCCTCTTAAATTGGCGCAGTCGTGGACAGGGAATGATCCTTGTCAAGGTTGGCAGATTGTTACGTGTGATAAGGATAAGAATATTGAGTCTGTGGTTTTAGTGAAGCAGAATTTGCAGGGAACAATTTCGCCTGCTTTtgccaatttgaaaaaattgaagaaattgatTCTATCTGGGAATAATTTAACTGGTTCTATACCTCAGAGTTTGACTACATTGTCTCAGCTTGAGACACTTGATGTCTCTAACAATAACCTATCAGGAGAGGTTCCCAAATTCTCACCGAAAGTGAAGTTAGTAACCGATGGTAATGTTTGGATTGGTAAAAATCCTGATTCTGGTCCCAATGGAAGGACTGATGGACCGGGAAAGGGTAATTCGATGGCGCCAGGTTCGATTGCTGGTATAGTTATTATTGTTGtgctttttgttgttgctgtGTTGTTTGTTTCTTGGAAGTGTTGTTCTAGAAAGCGGCTTCGGAAATTTGCAAGGGTTAGTAATCCTGAAAATGGGAAAGGAAATGTTAAGCTTGATCTTGCACGTGTTTCGAATGGATATGGTGGTGTTCCGAGCGAGTTGCAAAGCCAGAGCAGTGGTGATTATAGTCAGCTTCATGGTTTTGATGGGGGAAGTGACGTAAATCCTACAATTTCGATTGATATTCTTCGGCAAGTGACAAATGATTTCAGCGACGATAACATTTTGGGAAGGGGAGGGTTTGGTATTGTTTATAAAGGGGAGTTACCTGATGGAACTAAAATTGCTGTCAAGCGGATGATATCCGTTGCATCAGGAAGCAAAGGGTTGAATGAGTTCGAAGCAGAGATTTCTGTTCTTACTAAGGTTAGGCATAGACATCTGGTTGCTCTTATGGGATATTGCATCAATGGAAACGAGAGGCTTTTGGTGTATGAGCATATGCCTCAAGGGACATTAACACAGCATCTGTTTGAATGTCGTGAACATGGGTATACTCCTTTGACATGGAAACAAAGGTTGGTAATAGCTTTGGATGTTGGACGGGGGGTGGAATACTTGCACAGCTTAGCTCGGCAAAGCTTCATTCATAGAGACTTAAAACCATCAAATATACTATTAGGTGATGATATGAGAGCAAAGGTTGCAGATTTTGGGTTGGTTAAAAATGCACCGGATGGGAAGCATTCTATTGAGACAAAGTTGGCTGGAACATTTGGATATCTTGCACCCGAGTATGCAGCTACCGGAAAAGTGACAACCAAAGTGGATGTTTACGCGTTTGGGGTAGTTTTGATGGAACTGATCACAGGTAGAAAGGCATTAGACAATACTGTGCCTGGTGAAAGGTCTCATTTGGTTACTTGGTTCCGTAGGGTACTGATTAACAAGGAAGACATTCCAAAGGCAATTGATCAAACTCTCGACCCAGATGAAGAAACAATGTTGAGCATATATGAAGTGGCTGAGCTGGCTGGCCATTGCACCGTTCGTGAACCATATCAAAGGCCAGATATGGGGCATGCCGTGAATGTGTTGGGTCCCCTTGTGCAGCTATGGAAACCTACTACCCAAATAGACGAAGGAAGTTATGGCGTTGACAATCAGACGAGTCTTGCTGAAGCACTACGAAGGTGGCAAGCCCATGAAGGCACTTCAATGATATTTAGTGACATTTCCTCCTCACAAACCCAAACAAGTTCTAAATCTCCATTATTTGCAGGCAACTTTGATTCACCAGATTGCCGGTAG 2745 0.4124 MLQFSFFLISIITATTVVVADNDDDSAFMLNLLNSLKPPPSGWSSDTQFCKWDDKIKCDSSNRHVTSIDLSSRNLAGTLPSNLNSLTQLTILNLQNNNFSGPLPSLANLSSLTIAYLGNNQFNAVPPAAFSGLTSLQNLSISKNDFQPWTFPSELTQSSNLNYLDFDFANINGTLPDIFNNFTSLTELHLAYNNLIGELPNSLATSSIQKLWLNNNKFGLTGSIAVIANMTQLTQVWLHVNQFTGPIPDLTQCTNLYELLLRDNHLTGLVPVSLLNNMPSLQTVSLRNNDLQGPFPVFKNKNVKFEADGRNHFCLGNKTGPCNDMVMVMLQIAGGFGYPLKLAQSWTGNDPCQGWQIVTCDKDKNIESVVLVKQNLQGTISPAFANLKKLKKLILSGNNLTGSIPQSLTTLSQLETLDVSNNNLSGEVPKFSPKVKLVTDGNVWIGKNPDSGPNGRTDGPGKGNSMAPGSIAGIVIIVVLFVVAVLFVSWKCCSRKRLRKFARVSNPENGKGNVKLDLARVSNGYGGVPSELQSQSSGDYSQLHGFDGGSDVNPTISIDILRQVTNDFSDDNILGRGGFGIVYKGELPDGTKIAVKRMISVASGSKGLNEFEAEISVLTKVRHRHLVALMGYCINGNERLLVYEHMPQGTLTQHLFECREHGYTPLTWKQRLVIALDVGRGVEYLHSLARQSFIHRDLKPSNILLGDDMRAKVADFGLVKNAPDGKHSIETKLAGTFGYLAPEYAATGKVTTKVDVYAFGVVLMELITGRKALDNTVPGERSHLVTWFRRVLINKEDIPKAIDQTLDPDEETMLSIYEVAELAGHCTVREPYQRPDMGHAVNVLGPLVQLWKPTTQIDEGSYGVDNQTSLAEALRRWQAHEGTSMIFSDISSSQTQTSSKSPLFAGNFDSPDCR 914
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g01152 914 CDD STKc_IRAK 574 847 - -
Tsu02g01152 914 PANTHER RECEPTOR-LIKE KINASE TMK4 12 899 - -
Tsu02g01152 914 ProSiteProfiles Leucine-rich repeat profile. 88 110 IPR001611 GO:0005515
Tsu02g01152 914 SMART LRR_typ_2 133 158 IPR003591 -
Tsu02g01152 914 SMART LRR_typ_2 411 433 IPR003591 -
Tsu02g01152 914 SMART LRR_typ_2 387 410 IPR003591 -
Tsu02g01152 914 SMART LRR_typ_2 86 108 IPR003591 -
Tsu02g01152 914 SMART LRR_typ_2 182 206 IPR003591 -
Tsu02g01152 914 SMART LRR_typ_2 109 132 IPR003591 -
Tsu02g01152 914 Gene3D Ribonuclease Inhibitor 22 319 IPR032675 -
Tsu02g01152 914 Gene3D Phosphorylase Kinase; domain 1 535 645 - -
Tsu02g01152 914 SUPERFAMILY Protein kinase-like (PK-like) 556 858 IPR011009 -
Tsu02g01152 914 Gene3D Transferase(Phosphotransferase) domain 1 646 860 - -
Tsu02g01152 914 MobiDBLite consensus disorder prediction 890 914 - -
Tsu02g01152 914 Pfam Leucine rich repeat 365 424 IPR001611 GO:0005515
Tsu02g01152 914 Pfam Protein kinase domain 569 841 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu02g01152 914 PANTHER OSJNBA0070M12.3 PROTEIN 12 899 - -
Tsu02g01152 914 SMART serkin_6 568 848 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu02g01152 914 ProSitePatterns Protein kinases ATP-binding region signature. 574 596 IPR017441 GO:0005524
Tsu02g01152 914 ProSiteProfiles Protein kinase domain profile. 568 848 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu02g01152 914 Pfam Leucine rich repeat N-terminal domain 23 53 IPR013210 -
Tsu02g01152 914 Pfam Leucine rich repeat N-terminal domain 330 361 IPR013210 -
Tsu02g01152 914 MobiDBLite consensus disorder prediction 890 905 - -
Tsu02g01152 914 Gene3D Ribonuclease Inhibitor 325 448 IPR032675 -
Tsu02g01152 914 SUPERFAMILY L domain-like 36 449 - -
Tsu02g01152 914 ProSitePatterns Serine/Threonine protein kinases active-site signature. 693 705 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g01152 Tsu-Chr2 9526002 9529558 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g01152 68 875 Receptor kinase-like Gene Family AT1G55610 30.056 4.86e-85 294
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Tsu02g01152 Pkinase 4.9e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g01152 - - gmx:100286794 1127.46