Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g01143 ATGGAAGTTGCTCTGCCCCCTTCATCTGCCGCTGCTACCAGGAAAGAAGGATATATGGCTCCGTTTCTTGAGAAGACATATGACATTGTGAACGATCCCAACACAGATGAGATCGTTTCATGGAGCTCTACCAAAAGCTTCGTCATTTGGAACCCTACTGAATTTGCTTGTGTTATCCTCCCAACCTATTTCAAGCACAACAGTTTCTCAAGCTTCACCCGTCAACTCGATACCTATGGATTTCGAAAAATACATGCTGAGCAATGGGAGTATactaatgaaaattttataaaagatCAAAAGCATCTTCTGAAGAATATATACCGTAAGGACAGTCATAATGATCCTCAAGATTATGATGAACTAATAGAGAAAATCAACAACCATCAAACAAGAACAAATCTTCACTTGAAACGTTTTCAGCAACGATTGGATGCTATAGAGACcatgcaaaaaaaattgatgaactTATTTGAGAAAGCTCTTCAGAATCCTTCTTTTGTTGGTCAACTTTCTCAGAAATTTGCCTCAGGTTGA 537 0.3669 MEVALPPSSAAATRKEGYMAPFLEKTYDIVNDPNTDEIVSWSSTKSFVIWNPTEFACVILPTYFKHNSFSSFTRQLDTYGFRKIHAEQWEYTNENFIKDQKHLLKNIYRKDSHNDPQDYDELIEKINNHQTRTNLHLKRFQQRLDAIETMQKKLMNLFEKALQNPSFVGQLSQKFASG 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g01143 178 SMART hsfneu3 18 110 IPR000232 GO:0003700|GO:0006355|GO:0043565
Tsu02g01143 178 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-5 16 175 - -
Tsu02g01143 178 PRINTS Heat shock factor (HSF) domain signature 22 45 IPR000232 GO:0003700|GO:0006355|GO:0043565
Tsu02g01143 178 PRINTS Heat shock factor (HSF) domain signature 59 71 IPR000232 GO:0003700|GO:0006355|GO:0043565
Tsu02g01143 178 PRINTS Heat shock factor (HSF) domain signature 72 84 IPR000232 GO:0003700|GO:0006355|GO:0043565
Tsu02g01143 178 Pfam HSF-type DNA-binding 22 110 IPR000232 GO:0003700|GO:0006355|GO:0043565
Tsu02g01143 178 SUPERFAMILY "Winged helix" DNA-binding domain 20 110 IPR036390 -
Tsu02g01143 178 Gene3D - 14 111 IPR036388 -
Tsu02g01143 178 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 16 175 IPR027725 -
Tsu02g01143 178 Coils Coil 137 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g01143 Tsu-Chr2 9467643 9468938 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g01143 1 174 HSF AT4G13980 44.335 9.33e-46 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Tsu02g01143 HSF_DNA-bind 4.4e-29 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g01143 K09419 - gmx:100816484 194.126