Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g01142 ATGGGTCGTCGCAGAATTGAGATTGAGTCAGTGAAAGACTCTAACACGAGGCAAGTCACATTTTCAAAGCGTCGATCAGGCTTATTCAAGAAAGCAAATGAATTGTCTATTTTGTGTGGAGCAGAAGTTGCTATTGTTGTGTTTTCTCCGGGGAATAAGCCATACTCTTTTGGTCACCCGGGAGTTGATGTTGTTGCGGCCAAATATCTTCAACAAGATCCTGAACCAAGTGACTCAGAAGGAGACCTCTCTTCTGATGAATCCAATATGGACGAGTTGAATCTGAAACTTGACGAGGTGTTGGCCCAAATCCGTGAAGGTGAAAAGCAGACTGAGACTTACGATGAGATCCTGAAGCAAAATGACGTGACAACACTCTCTGAccttgaagaattgaaagattCATATAAAGAGTTTCAAGACGGGGTAAAGTTGCGTCTTAGTGATCTCGAGATATCAGAATGTATGATGCTTCTTGCTAAGGAGCCAGTGGTGGGGGTTAAAGCGTAA 510 0.4196 MGRRRIEIESVKDSNTRQVTFSKRRSGLFKKANELSILCGAEVAIVVFSPGNKPYSFGHPGVDVVAAKYLQQDPEPSDSEGDLSSDESNMDELNLKLDEVLAQIREGEKQTETYDEILKQNDVTTLSDLEELKDSYKEFQDGVKLRLSDLEISECMMLLAKEPVVGVKA 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g01142 169 Gene3D - 14 80 IPR036879 GO:0003677|GO:0046983
Tsu02g01142 169 SUPERFAMILY SRF-like 1 73 IPR036879 GO:0003677|GO:0046983
Tsu02g01142 169 PANTHER MADS BOX PROTEIN 2 168 - -
Tsu02g01142 169 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL29 2 168 - -
Tsu02g01142 169 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Tsu02g01142 169 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Tsu02g01142 169 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Tsu02g01142 169 Coils Coil 83 110 - -
Tsu02g01142 169 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Tsu02g01142 169 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Tsu02g01142 169 CDD MADS_MEF2_like 2 71 IPR033896 GO:0000977|GO:0045944
Tsu02g01142 169 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g01142 Tsu-Chr2 9465524 9466033 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g01142 1 161 Type I MADS-box Gene Family AT2G34440 43.860 6.12e-39 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Tsu02g01142 SRF-TF 1.3e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g01142 - - mtr:MTR_1g054265 242.276