Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g01139 ATGGGTCGTCGCAGAATTGAGATTGAGTCGGTGAAAGATCCCAACATAAGGCAGGTCACATTCTCAAAACGTCGAAAAGGCTTATTCAAAAAAGCAAATGAATTGTCTATTTTGTGTGGAGTAGAAGTTGCTATTGTCGTGTTTTCTCCGGGTAACAAGCCATACTCTTTTGGTCACCCAGGAGTTGATGTTGTTGCGGCCAAATATCTTCAAGAAGATCCTGAACCAAGTGACTCCGAAGGAGACCTCTCTTCTGATGCTTCAAATATGGATGAGCTGAATCTGGAACTTGATGAGGTGTTGGCCCAAATCCGTGAAGGAGAAAAGCAGACTGAGACTTATGATGAGATCCTGAAGCAAAATGACATGACAACACTCTCTGACCTTGAAGAATTGAGGGATTCATATAAAGAGTTTCATGATGGGATAAAATTGCGTCTCAGTGATCTCGAGATATCAGAATGTATGATGCTTCTTGCTAAGGAGCCGGTGATAGGGGTTAAAGCAAAATCTGCAACAAGAGACTAA 528 0.4205 MGRRRIEIESVKDPNIRQVTFSKRRKGLFKKANELSILCGVEVAIVVFSPGNKPYSFGHPGVDVVAAKYLQEDPEPSDSEGDLSSDASNMDELNLELDEVLAQIREGEKQTETYDEILKQNDMTTLSDLEELRDSYKEFHDGIKLRLSDLEISECMMLLAKEPVIGVKAKSATRD 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g01139 175 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Tsu02g01139 175 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Tsu02g01139 175 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Tsu02g01139 175 PANTHER MADS BOX PROTEIN 2 171 - -
Tsu02g01139 175 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL29 2 171 - -
Tsu02g01139 175 CDD MADS 2 60 - -
Tsu02g01139 175 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Tsu02g01139 175 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 57 IPR002100 GO:0003677|GO:0046983
Tsu02g01139 175 Coils Coil 90 110 - -
Tsu02g01139 175 Gene3D - 14 79 IPR036879 GO:0003677|GO:0046983
Tsu02g01139 175 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Tsu02g01139 175 SUPERFAMILY SRF-like 1 72 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g01139 Tsu-Chr2 9453245 9453772 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g01139 1 161 Type I MADS-box Gene Family AT2G34440 43.860 1.40e-38 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Tsu02g01139 SRF-TF 2.8e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g01139 - - mtr:MTR_4g131030 254.603