Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g01122 ATGCGTTGTTACGGCCTAACAATCCCCGGAAGCGATAATCGCTTCTTCATTCCAACACTAACACCACCATCACTATCCttcaaacccaaacccataaccCAAATCTCATTCGGGTCAAAACTCAAAGCCACCTTAAACGACGGCGTAGTCGTCGCCGACCAACTCAGTTTCTATGATCTTCTCGGTATACCCGAATCCGGTTCATTAATGGATATCAAAAGCGCTTATAAACAACTAGCAAGAAAATATCACCCTGATGTTTCTCCACCGGGTCGGGTCGAAGAGTATACAAAGAGGTTTATTCAAGTACAGGAAGCGTACGAAACGTTATCTGATCCTTCAAGGAAAATTATGTATGATAGAGATATGGCTAGAGGGATTCATCTTGCTTTCAATGCTCGTAAACGCTATAATTGTTCTGATAATCAGGTAAGTGAACAAAAAGGCGAATGGAAATCTCGTTGGCAATCTCAACTCTCTGGTCTGAAGAGAAGAAGTGAAAGCAAGGATGGTGCTGAGAATATGTCATGGGCTGCTCGAATGCGCCAACAGAGGGAGGAATTGTGA 567 0.418 MRCYGLTIPGSDNRFFIPTLTPPSLSFKPKPITQISFGSKLKATLNDGVVVADQLSFYDLLGIPESGSLMDIKSAYKQLARKYHPDVSPPGRVEEYTKRFIQVQEAYETLSDPSRKIMYDRDMARGIHLAFNARKRYNCSDNQVSEQKGEWKSRWQSQLSGLKRRSESKDGAENMSWAARMRQQREEL 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g01122 188 ProSitePatterns Nt-dnaJ domain signature. 100 119 IPR018253 -
Tsu02g01122 188 SUPERFAMILY Chaperone J-domain 52 126 IPR036869 -
Tsu02g01122 188 ProSiteProfiles dnaJ domain profile. 56 123 IPR001623 -
Tsu02g01122 188 Pfam DnaJ domain 57 120 IPR001623 -
Tsu02g01122 188 PRINTS DnaJ domain signature 95 115 IPR001623 -
Tsu02g01122 188 PRINTS DnaJ domain signature 76 91 IPR001623 -
Tsu02g01122 188 PRINTS DnaJ domain signature 58 76 IPR001623 -
Tsu02g01122 188 PANTHER CHAPERONE PROTEIN DNAJ 20 CHLOROPLASTIC 34 187 - -
Tsu02g01122 188 Gene3D DnaJ domain 45 160 IPR036869 -
Tsu02g01122 188 SMART dnaj_3 55 115 IPR001623 -
Tsu02g01122 188 CDD DnaJ 57 112 IPR001623 -
Tsu02g01122 188 MobiDBLite consensus disorder prediction 157 188 - -
Tsu02g01122 188 PANTHER CHAPERONE PROTEIN DNAJ 20, CHLOROPLASTIC 34 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g01122 Tsu-Chr2 9295718 9299447 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g01122 58 120 C2H2 Transcription Factor Family AT1G74250 40.909 3.42e-07 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g01122 - - cam:101492872 303.523