Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g01121 ATGGCTGATCGGAGTTTGGCCGTTGTGAAACCGGTATGGATGAAACAAGCCGAGGAAGCGAAGATTAAGAGCGAGGCTGAGAAAGATGCGGCTGCTAAAGCTGCTTTTGAAGCGACTTTTAAGGGTTTGGTGAAAAGTCATGAGAAGAGGGCTGCTAATTCTGATAGTGATTCTGACGAATATGAGGATTTGGCTCATAAGCCGATTGGGCCAGTTGATCCTTCCAAGTGCACTGCTGCTGGCACTGGAATTGCTGGAGGAACTGCCTGTGCGGCTTCTTCGTTCTCCGTGGTGACTAAGGATGCTGATGAGAGGAAGGTTTCGACTGGCGGTGCTCAAATTAAGGTGAAAGTGACGCCTGGTTTGGGTGTTGGAGGGTCTGATCAAGAAGGGATTGTGAAGGATATGGGTGATGGGACTTATACTGTTACTTATGTGGTGCCTAAGAGAGGGAATTATATGGTCAATGTTGAATGTAATGGCAGGCCAATCAATGGCAGTCCCTTCCCTGTGTTTTTTAGTGCAGgtAATAGTAATGGAGGGCTGCTGGGTTTAGCTCCTGCATCTTCCTATCCAAATATGGTTAATCAAACTATGCCCAACATGCCGAATTACTCTGGCTCTGTCTCAGGGGCATTCCCAGGATTGTTGGGAATGATTCCAGGAATTATTGCCGGAGCTTCTGGGGGTGCTATTTTGCCAGGAATTGGAGCCACACTCGGGGAAGTTTGTCGCGATTACTTGAATGGGCGCTGTGCAAAAGTTGATTGTAATTTGAATCACCCACCTCATAATTTGCTCATGACTGCCTTAGCTGCCACAACTTCAATGGGATCACTAAGCCAGGCTCCTATGGCACCTTCTGCTGCTGCAATGGCTGCCGCTCAGGCAATAGTTGCTGCCCAAGCCCTTCAAGCTCATGCAGCTCAGGTGCAAGCTCAGTCAGCAAAAGATTCTGTTGGTTCACCTGATAAAGCCAATAAGGAGGATGTGTTGAAGAAAACTCTTCAAGTTAGCAATCTTAGCCCAGTTCTCACTGTGGAACAACTAAAACAACTCTTTGGTTTCTGTGGCACTGTTGTTGAATGTACAATCACTGATTCAAAGcattttgcttatatagaatACTCAAAACCTGAAGAAGCAACTGCTGCTATGGCATTGAACAACATTGATGTTGGGGGGCGTCCTTTGAACGTTGAAATGGCTAAATCACTTCCGCCGAAACCAACTATGAATTCTTCACATGCTTCATCCTCTCTTCCTTTGATGATGCAGCAAGCTGTTGCCATGCAACAGATGCAATTCCAGCAAGCACTGATTATGCAACAAACTATGACTGCACAGCAGGCTGCTAACCGAGCTGCAACCATGAAATCTGCCACGGATTTAGCAGCAGCACGAGCTTTAGAAATAAGTAAGAAATTGAATCCCGATGGACTTGAACATGAAGAAAAAGAGCCGAAACAGAAATCCAGATCACCTTCTCCCCAACCTGAAAGAGCACGATCAAAGTCAAGATCTCCTATCAATTACAGGAGAAGGAGGAAGTCTCGTTCATACTCACCTGCTCGCCATTTTAAGGTTCATCGGTCCAGGTCACCATTGAGGATCCATCATCATCCGAGGTATGAAAGGGACTGGAGGTCCTATAGAGACAACAGGGAACATAGTGATAGGTTCAGACGACGAGATTCAGATAGATTTCTTGATAATCATTCATCTGGTTCGAGAAGAAACAGAAGTAGGAGTGTGAGCCCTCATTCAAGGAGATCCCCTGTTTCTCCAAAACGTCACGGAGGGAGTTCATCTCATAGAGGAAGGAAACAGTCTCGTGCTGATTCGGGTTCTCCAAGTAATCGCAGAGGAAGTAGGTCTTCTCCAAAGATTGATGAGAAGAAATTAAGAAACAGAAGGCGCTCGAGGTCAAGATCTTCAGATGATAAGCTTAACCTCTCAGAGAAAAACGAAGAAATCTTGCATGAAAAGGCCAAACAAAGAGAGCGAAGGCGGTCCAGGTCAGTATCTGTGGATGAGAAATCTCACAGGAGCCGATCTTCCCCAAGAAAGGTGGCTGAAAGCAGACCCAGGCACAAGAAGCGGTCTAGGTCAAAATCTGTGGACGATAAGCATCATTTGTCTGACAAACtggatgaaaacaaaaataggagGTCAGTATCTTCAGATGATAAGGATAACTCCTTTGACAAAAACGAAGAAGTCATACCTGAAAAATCCAAACATAGAGAGCGAAGGCGGTCCAGGTCCGTATCTGTGGGCGAGAAGCCTCAGAGGAGGCGATCATCCCCTAGAAAAGTGGATGAAAGCAGATCTAGGCACAGAAAGCGGTCTAGGTCAAAATCTGTGGATGATAAGCGTCGCTTGTCTGGGAAATTGGACGAGAACAGAAACAGAAGATCAAGGCATAGTGATAAAAGACGCTCCAGATCAAGATCATTGGAAAATAGGGATCGGACTGATGTCAGAGAGGATGGAAGCAAACATGAAAAGTCAAAACATCATGATAAAAAAGGTAACAGGTCAGAGTCTGATGAAGGGAAGCATCATTCTAAAGGTAAATCTGGTGAACATAGAGATAAGAAGTCAAAGCATCGTGATAGAAGACGTTCCAGGTCAATATCATCAGAAGGTAAACATGACAAAGGAGGGATTTCATCTCATAGAGACGAGAACGATTTTGAACACAAAAGATTCAGGTCAAAATCTCCTAATGCCAAGCATCACTGCGGtgatgattatgaaaataaagatgaaagatCAGAGCATCAAGAGAAAACCTTGTCTaaatcaaaattggaaaatCGTCAGCAATATGATGGAAGTGATTCTTCCCCTGGAAATTTCAAGCAGTATGAATCAAAAgggaaaacaaaatttgattctGGATCTGCAGAAGTTAAGCACCATTTGAATGATGGAGAAAATGGTACCAGTGATGAAAATTCAAAACATCTTGATAAGGCCACACAGGAATCGATTTTGCATGTGAAGGGTTTAACAAGCCATTCTGGTAATGGGATATTGATTTCTGAGAATGAGAACACAAAGTTAGATGGGTGGACTGAAAATGCTGGAGCTGATGATGACGCAGGGTGGATATTTGTAGAAGAAGTGGGAAGTGGGAAATGTTAA 3153 0.4326 MADRSLAVVKPVWMKQAEEAKIKSEAEKDAAAKAAFEATFKGLVKSHEKRAANSDSDSDEYEDLAHKPIGPVDPSKCTAAGTGIAGGTACAASSFSVVTKDADERKVSTGGAQIKVKVTPGLGVGGSDQEGIVKDMGDGTYTVTYVVPKRGNYMVNVECNGRPINGSPFPVFFSAGNSNGGLLGLAPASSYPNMVNQTMPNMPNYSGSVSGAFPGLLGMIPGIIAGASGGAILPGIGATLGEVCRDYLNGRCAKVDCNLNHPPHNLLMTALAATTSMGSLSQAPMAPSAAAMAAAQAIVAAQALQAHAAQVQAQSAKDSVGSPDKANKEDVLKKTLQVSNLSPVLTVEQLKQLFGFCGTVVECTITDSKHFAYIEYSKPEEATAAMALNNIDVGGRPLNVEMAKSLPPKPTMNSSHASSSLPLMMQQAVAMQQMQFQQALIMQQTMTAQQAANRAATMKSATDLAAARALEISKKLNPDGLEHEEKEPKQKSRSPSPQPERARSKSRSPINYRRRRKSRSYSPARHFKVHRSRSPLRIHHHPRYERDWRSYRDNREHSDRFRRRDSDRFLDNHSSGSRRNRSRSVSPHSRRSPVSPKRHGGSSSHRGRKQSRADSGSPSNRRGSRSSPKIDEKKLRNRRRSRSRSSDDKLNLSEKNEEILHEKAKQRERRRSRSVSVDEKSHRSRSSPRKVAESRPRHKKRSRSKSVDDKHHLSDKLDENKNRRSVSSDDKDNSFDKNEEVIPEKSKHRERRRSRSVSVGEKPQRRRSSPRKVDESRSRHRKRSRSKSVDDKRRLSGKLDENRNRRSRHSDKRRSRSRSLENRDRTDVREDGSKHEKSKHHDKKGNRSESDEGKHHSKGKSGEHRDKKSKHRDRRRSRSISSEGKHDKGGISSHRDENDFEHKRFRSKSPNAKHHCGDDYENKDERSEHQEKTLSKSKLENRQQYDGSDSSPGNFKQYESKGKTKFDSGSAEVKHHLNDGENGTSDENSKHLDKATQESILHVKGLTSHSGNGILISENENTKLDGWTENAGADDDAGWIFVEEVGSGKC 1050
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g01121 1050 MobiDBLite consensus disorder prediction 692 706 - -
Tsu02g01121 1050 ProSiteProfiles Zinc finger C3H1-type profile. 243 264 IPR000571 GO:0046872
Tsu02g01121 1050 SMART rrm1_1 335 401 IPR000504 GO:0003723
Tsu02g01121 1050 Coils Coil 649 669 - -
Tsu02g01121 1050 SUPERFAMILY E set domains 71 171 IPR014756 -
Tsu02g01121 1050 MobiDBLite consensus disorder prediction 46 68 - -
Tsu02g01121 1050 SUPERFAMILY RNA-binding domain, RBD 323 413 IPR035979 GO:0003676
Tsu02g01121 1050 MobiDBLite consensus disorder prediction 814 859 - -
Tsu02g01121 1050 Pfam Filamin/ABP280 repeat 71 169 IPR017868 -
Tsu02g01121 1050 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 334 405 IPR000504 GO:0003723
Tsu02g01121 1050 MobiDBLite consensus disorder prediction 508 538 - -
Tsu02g01121 1050 MobiDBLite consensus disorder prediction 707 747 - -
Tsu02g01121 1050 MobiDBLite consensus disorder prediction 579 599 - -
Tsu02g01121 1050 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 338 398 IPR000504 GO:0003723
Tsu02g01121 1050 MobiDBLite consensus disorder prediction 754 775 - -
Tsu02g01121 1050 Gene3D - 294 420 IPR012677 -
Tsu02g01121 1050 PANTHER SPLICING REGULATORY GLUTAMINE/LYSINE-RICH PROTEIN 1 1 757 - -
Tsu02g01121 1050 MobiDBLite consensus disorder prediction 474 538 - -
Tsu02g01121 1050 ProSiteProfiles Filamin/ABP280 repeat profile. 69 173 IPR017868 -
Tsu02g01121 1050 Coils Coil 14 34 - -
Tsu02g01121 1050 MobiDBLite consensus disorder prediction 876 943 - -
Tsu02g01121 1050 MobiDBLite consensus disorder prediction 567 992 - -
Tsu02g01121 1050 Gene3D Immunoglobulins 71 178 IPR013783 -
Tsu02g01121 1050 CDD RRM_SF 336 401 - -
Tsu02g01121 1050 MobiDBLite consensus disorder prediction 960 992 - -
Tsu02g01121 1050 MobiDBLite consensus disorder prediction 475 500 - -
Tsu02g01121 1050 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 1 757 - -
Tsu02g01121 1050 MobiDBLite consensus disorder prediction 789 807 - -
Tsu02g01121 1050 MobiDBLite consensus disorder prediction 944 958 - -
Tsu02g01121 1050 MobiDBLite consensus disorder prediction 860 875 - -
Tsu02g01121 1050 MobiDBLite consensus disorder prediction 641 691 - -
Tsu02g01121 1050 SMART flmn_3 73 176 IPR001298 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g01121 Tsu-Chr2 9281568 9289216 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g01121 321 404 Eukaryotic Initiation Factors Gene Family AT2G23350 35.556 6.94e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g01121 - - cam:101491057 1443.71