Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g01104 ATGGCCGGTGTTTCGCTCCAGTGCGGTGATTGTGGCGCTCTTTTGAAATCAGTAGAAGAAGCTCAAGAACATGCTGAACTCACTTCACACTCCAATTTCGCTGAATCCACAGAACCCGTTCTCAATCTCGTCTGCACCACTTGCTCCAAACCCTGCCGAACCAAAACCGAGAGCGATTTACACACTAAGAGAACAGGGCACACTGAGTTTGTTGACAAGACTTCGGAAACAGCAAAACCAATAAGTTTAGAGGTTCCTAAGGGGGGTTCAGAATCACAAGAAGGTGGAACTAGTGATCAAAATGAAGAATTGGTTGTTCCTGAAGTTGATAAGAAGTTGCTTGAGGAACTTGAATCAATGGGCTTTTCTACAGCTCGTGCAACACGGGCGCTTCACTTTTCAGGTAATGCTAGCCTCGAGGCTGCTGTAACTTGGATAGAAAACCATGAGAATACGCCTGACATAGATGAGATGCCCTTGGTATCTGCTGCCAGTAAAGCTAAAGCTTCCAAACCCTCTCTTACTCCAGAAGAAACAAATGCCATACTAAAGGAACTAAGGGAGAAAGCTCgtaagaagaaagaagaagaagagaagagaatggagagagaaagagaaaagGAGAGAATTCGAGTCGGCAAGGAGTTGCTTGAAGCAAAGAGGATTGAAGAAGACAATGAGAGAAAACGGTTGTTAGCTTTGAGAAAAGCAGAGAAAGAGGAAGAGAGAAGGGCTAGAGAGAAAATCAAGCAAAAGTTGGAAGAAGACAAgGCGGAAAGAAGGCGAAAACTTGGATTGCCTCCGGATGAGCCTTCAACAGCCAAACCTTCAACTGTTGTAGAAGAGAAAAAGGTATTATCTTGCCCAGAAATGGTGGTGTTTTTTATGCCATGcctatttatttga 906 0.415 MAGVSLQCGDCGALLKSVEEAQEHAELTSHSNFAESTEPVLNLVCTTCSKPCRTKTESDLHTKRTGHTEFVDKTSETAKPISLEVPKGGSESQEGGTSDQNEELVVPEVDKKLLEELESMGFSTARATRALHFSGNASLEAAVTWIENHENTPDIDEMPLVSAASKAKASKPSLTPEETNAILKELREKARKKKEEEEKRMEREREKERIRVGKELLEAKRIEEDNERKRLLALRKAEKEEERRAREKIKQKLEEDKAERRRKLGLPPDEPSTAKPSTVVEEKKVLSCPEMVVFFMPCLFI 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g01104 301 MobiDBLite consensus disorder prediction 233 281 - -
Tsu02g01104 301 PANTHER F13M7.16 PROTEIN 1 286 - -
Tsu02g01104 301 Pfam UBA/TS-N domain 114 146 IPR015940 -
Tsu02g01104 301 SUPERFAMILY UBA-like 88 160 IPR009060 GO:0005515
Tsu02g01104 301 Gene3D - 110 156 - -
Tsu02g01104 301 PANTHER F13M7.16 PROTEIN 1 286 - -
Tsu02g01104 301 Coils Coil 222 259 - -
Tsu02g01104 301 MobiDBLite consensus disorder prediction 191 210 - -
Tsu02g01104 301 CDD UBA_PUB_plant 108 156 - -
Tsu02g01104 301 MobiDBLite consensus disorder prediction 233 268 - -
Tsu02g01104 301 Coils Coil 179 211 - -
Tsu02g01104 301 MobiDBLite consensus disorder prediction 63 104 - -
Tsu02g01104 301 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 108 149 IPR015940 -
Tsu02g01104 301 SMART uba_6 110 148 IPR015940 -
Tsu02g01104 301 ProSitePatterns Zinc finger C2H2 type domain signature. 8 30 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g01104 Tsu-Chr2 9173834 9178284 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g01104 96 285 C2H2 Transcription Factor Family AT1G04850 73.575 1.06e-59 191
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g01104 K24348 - thj:104826121 381.719