Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g01088 ATGGATTCTGCTCCTTCCAATTCACATGGAAATCTCGATGAACAGATTGCTCAGCTCATGCAGTGCAAACCCTTGTCCGAACAAGAGGTCAGGGTCTTGTGTGAAAAGGCAAAGGAGATTTTGATGGAAGAGAGCAATGTCCAGCCTGTAAAAAGTCCTGTTACAATCTGTGGTGATATTCATGGGCAGTTCCATGATCTTGCAGAGCTTTTCCGCATTGGAGGGAAGTGTCCAGATACAAACTACTTGTTTATGGGAGATTATGTCGATCGTGGCTATTATTCTGTTGAAACTGTAACGCTTTTGGTCTCCCTTAAAGTGCGTTATCGTCAGCGTATCACCATTTTGAGGGGAAATCATGAAAGTCGCCAGATTACTCAAGTTTATGGATTTTATGATGAGTGCCTACGGAAGTATGGTAGTGCTAATGTTTGGAAGATGTTTACTGATTTGTTTGACTACTTCCCGTTGACAGCATTGGTTGAATCTGAAATATTCTGTCTTCACGGTGGGTTGTCTCCGTCTATTGAAACCCTTGACAACATTCGTAATTTTGATCGCGTGCAAGAAGTTCCTCATGAGGGACCCATGTGTGATCTTCTATGGTCTGATCCGGATGATCGCTGTGGTTGGGGTATCTCTCCTAGAGGTGCTGGATACACCTTTGGCCAGGACATATCTGAGCAGTTTAACCATACCAATAATTTGAAGCTGATTGCTAGAGCTCACCAGCTGGTTATGGAAGGATATAACTGGGGTCATGATCAAAAGGTGGTTACTATATTCAGTGCACCTAATTATTGTTATCGCTGTGGGAACATGGCATCCATCCTTGAAGTTGATGATTGCAAAGGACACACATTCATTCAGTTTGAGCCAGCTCCAAGGAGGGGAGAGCCAGATGTAACCAGGAGAACCCCTGACTACTTCCTATAA 936 0.437 MDSAPSNSHGNLDEQIAQLMQCKPLSEQEVRVLCEKAKEILMEESNVQPVKSPVTICGDIHGQFHDLAELFRIGGKCPDTNYLFMGDYVDRGYYSVETVTLLVSLKVRYRQRITILRGNHESRQITQVYGFYDECLRKYGSANVWKMFTDLFDYFPLTALVESEIFCLHGGLSPSIETLDNIRNFDRVQEVPHEGPMCDLLWSDPDDRCGWGISPRGAGYTFGQDISEQFNHTNNLKLIARAHQLVMEGYNWGHDQKVVTIFSAPNYCYRCGNMASILEVDDCKGHTFIQFEPAPRRGEPDVTRRTPDYFL 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g01088 311 SUPERFAMILY Metallo-dependent phosphatases 10 296 IPR029052 -
Tsu02g01088 311 CDD MPP_PP2A_PP4_PP6 11 295 - -
Tsu02g01088 311 SMART pp2a_7 25 295 IPR006186 GO:0016787
Tsu02g01088 311 Gene3D - 5 311 IPR029052 -
Tsu02g01088 311 PRINTS Serine/threonine phosphatase family signature 53 80 IPR006186 GO:0016787
Tsu02g01088 311 PRINTS Serine/threonine phosphatase family signature 82 109 IPR006186 GO:0016787
Tsu02g01088 311 PRINTS Serine/threonine phosphatase family signature 115 139 IPR006186 GO:0016787
Tsu02g01088 311 PRINTS Serine/threonine phosphatase family signature 150 176 IPR006186 GO:0016787
Tsu02g01088 311 PRINTS Serine/threonine phosphatase family signature 179 206 IPR006186 GO:0016787
Tsu02g01088 311 PRINTS Serine/threonine phosphatase family signature 235 255 IPR006186 GO:0016787
Tsu02g01088 311 PRINTS Serine/threonine phosphatase family signature 257 273 IPR006186 GO:0016787
Tsu02g01088 311 ProSitePatterns Serine/threonine specific protein phosphatases signature. 116 121 IPR006186 GO:0016787
Tsu02g01088 311 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A-RELATED 4 311 - -
Tsu02g01088 311 Pfam Calcineurin-like phosphoesterase 53 244 IPR004843 GO:0016787
Tsu02g01088 311 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 4 311 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g01088 Tsu-Chr2 9063185 9070874 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g01088 17 241 Calmodulin-binding Proteins AT5G63870 34.082 4.46e-32 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g01088 K04382 - gmx:100798408 650.588