Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g01068 ATGAAGAATAGGTCCAAGTTTGTTGGAGTTAGACAAAGGGCATCAGGGAAATGGGCAGCAGAGATTAAAGACACATCAAAGAACATTAGGATGTGGCTTGGTACATATAAAACCGCCGAGGAAGCTGCTCGAGCTTATGACGAAGCTGCTTGTCTTCTTCGAGGTTCGAACACACGCACCAATTTCTCTACAACTCATTCCATTCCGTCCAATTCTCCTATATCTCTCAAACTCAAAAACCTCCTTCATCGAAAATCTATCTTGAATCGAAGTCAAAGCCAAAGTCAAAACCTGTCCACTTCGATGAATTATTCTTTTCAAGGTTCTCCTATTGATAACAGCATCATGGTCATGGAAAATGAAAACAACTCTTTTTGTAGTAGTGAAGAGTCAAAGTCTTTGTTTTGGGTTCAGAATCAAGTATCTGAATATAACCCTTATTATGGAGTTGATATGAATATGATGAACTGTTCATTGGGCATTACACCAAATACATTACAGGTTGATTATTCTTGGCCATTACCTCAACAAAGGATTAACGAGTTAACAACACCAAAAGATAATATGAATGTATATGGCATGAATGAATGCTATGTGGAGAATACATACGAATCCAAGGGTGTTGCCAATGTTGTCTCTGAATTGTGTTGGAATCGCAATCTTCTCCTGGAGCTCCATTTTCCCATTCCTCAGGCCACCTTGATGTATTGCGACGATGTCATTGTCATCTATCTATCCGGTAATCTTGTGCAACATCAACGTACCAAGCATATTGAGATCAACATTTATTTTGTTCGTGAAAAAGTAGCTCTTGGTCAGGCATGTGCCCTTCATATTACCTCCAGACATCAGATTGCAAACATCTTTATTAAAGGGCTTCATCGCATTCTCTTTGATGATTTTTGGACCGGTCTAAACGTCTGTGAACCTTCCGCTTTCACTGCAGGGGTGTAA 954 0.3962 MKNRSKFVGVRQRASGKWAAEIKDTSKNIRMWLGTYKTAEEAARAYDEAACLLRGSNTRTNFSTTHSIPSNSPISLKLKNLLHRKSILNRSQSQSQNLSTSMNYSFQGSPIDNSIMVMENENNSFCSSEESKSLFWVQNQVSEYNPYYGVDMNMMNCSLGITPNTLQVDYSWPLPQQRINELTTPKDNMNVYGMNECYVENTYESKGVANVVSELCWNRNLLLELHFPIPQATLMYCDDVIVIYLSGNLVQHQRTKHIEINIYFVREKVALGQACALHITSRHQIANIFIKGLHRILFDDFWTGLNVCEPSAFTAGV 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g01068 317 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-11 3 102 - -
Tsu02g01068 317 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-11 117 213 - -
Tsu02g01068 317 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 117 213 - -
Tsu02g01068 317 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 3 102 - -
Tsu02g01068 317 Pfam AP2 domain 5 55 IPR001471 GO:0003700|GO:0006355
Tsu02g01068 317 CDD AP2 5 62 IPR001471 GO:0003700|GO:0006355
Tsu02g01068 317 SUPERFAMILY DNA-binding domain 5 64 IPR016177 GO:0003677
Tsu02g01068 317 SMART rav1_2 6 70 IPR001471 GO:0003700|GO:0006355
Tsu02g01068 317 CDD RNase_HI_RT_Ty1 202 296 - -
Tsu02g01068 317 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Tsu02g01068 317 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Tsu02g01068 317 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Tsu02g01068 317 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g01068 Tsu-Chr2 8851829 8855174 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g01068 3 83 AP2-EREBP Transcription Factor Family AT5G19790 75.309 4.00e-37 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Tsu02g01068 AP2 1.3e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g01068 - K09286 gmx:100803832 233.032