Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g01055 ATGTGGTACTCGTTCCTTCCAATGAAAGGAATATCGTTGTTCTCATTCTCGCGCCACCGTATTCTTCACTCTCAATGCcgtttcttcaattcttcttcctcaccattatcatcatcaccTTCCTCTAACAAGCTCTTTGTAGGAGGTCTATCATGGTCGGTTGAtgaaaaatctctcaaaaatgCTTTCTCTTCCTTTGGAGATGTAACCGAAGTGAGGATAGTATATGATAAAGACAGTGGTAGAGCTAGAGGATTTGGGTTTGTCATCTTTTCAAATGAAGATGATGCAAAATCTGCAAAAGATGCTATGGATGGAAAGGCATTGTTAGGTAGACCGTTGAGGATAAATTTTGCTCTCGAGAAGGCCCGTGGTGGACCTGTTGTAGTTCCTCGGTTTTCAGATAATGGACGCTTTAACAGGCCCTGA 429 0.3706 MWYSFLPMKGISLFSFSRHRILHSQCRFFNSSSSPLSSSPSSNKLFVGGLSWSVDEKSLKNAFSSFGDVTEVRIVYDKDSGRARGFGFVIFSNEDDAKSAKDAMDGKALLGRPLRINFALEKARGGPVVVPRFSDNGRFNRP 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g01055 142 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 45 115 IPR000504 GO:0003723
Tsu02g01055 142 Gene3D - 24 125 IPR012677 -
Tsu02g01055 142 PANTHER TRANSFORMER-2-RELATED 19 139 - -
Tsu02g01055 142 SMART rrm1_1 44 117 IPR000504 GO:0003723
Tsu02g01055 142 SUPERFAMILY RNA-binding domain, RBD 23 128 IPR035979 GO:0003676
Tsu02g01055 142 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 43 121 IPR000504 GO:0003723
Tsu02g01055 142 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 4, MITOCHONDRIAL 19 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g01055 Tsu-Chr2 8756110 8757120 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g01055 41 122 C2H2 Transcription Factor Family AT2G19380 36.585 1.72e-13 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g01055 - - cam:101502883 195.282