Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g01053 ATGGAGaaccaaagaaagaaaaccTCAGGGCGCAAGAAGATCGAGATCAAGAAGCTTGACAAACAAACCAGCAAACAAGTCACATTCTCGAAAAGAAGACAAGGTTTGTTCAAAAAAGCAAGTGAACTTTGTGTTTTATGTGGCGCTCATGCAGCCATCGTTGTGTTTTCTCCTGCTGACAAACTATACTGTTTTGGTCAACCAAATACCGATACAATCCTCGATAGCTACATAAGTGGAACCACCGAGTTCGGGGATTTAAAGTCAGCAGGAAATTCTCAGAACTACGAAGAGTACAATAAACAATATGAAGAGGCGTTGAAGATGTTGGAGTTGGAAAAGAAGAAACTTGCAGATGCTGAAAATTTGGCTAGGTTTTGGAACACAAATGATTGGTGGAATGATTCAATTGATTATATGAGTAGTGATCAACTTGAGCAATTTATGGTTTCCATTTATGAATTAAGGAGGAAGCTAATTGAAAAAGCTGATGAACATGTGATGAAGCTTAACATGTAG 519 0.3719 MENQRKKTSGRKKIEIKKLDKQTSKQVTFSKRRQGLFKKASELCVLCGAHAAIVVFSPADKLYCFGQPNTDTILDSYISGTTEFGDLKSAGNSQNYEEYNKQYEEALKMLELEKKKLADAENLARFWNTNDWWNDSIDYMSSDQLEQFMVSIYELRRKLIEKADEHVMKLNM 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g01053 172 Coils Coil 93 123 - -
Tsu02g01053 172 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 7 170 - -
Tsu02g01053 172 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 20 65 IPR002100 GO:0003677|GO:0046983
Tsu02g01053 172 ProSiteProfiles MADS-box domain profile. 9 69 IPR002100 GO:0003677|GO:0046983
Tsu02g01053 172 PANTHER MADS BOX PROTEIN 7 170 - -
Tsu02g01053 172 Gene3D - 22 89 IPR036879 GO:0003677|GO:0046983
Tsu02g01053 172 SMART madsneu2 9 68 IPR002100 GO:0003677|GO:0046983
Tsu02g01053 172 PRINTS MADS domain signature 46 67 IPR002100 GO:0003677|GO:0046983
Tsu02g01053 172 PRINTS MADS domain signature 31 46 IPR002100 GO:0003677|GO:0046983
Tsu02g01053 172 PRINTS MADS domain signature 11 31 IPR002100 GO:0003677|GO:0046983
Tsu02g01053 172 SUPERFAMILY SRF-like 10 79 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g01053 Tsu-Chr2 8734875 8735393 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g01053 6 163 Type I MADS-box Gene Family AT5G60440 38.182 6.61e-34 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Tsu02g01053 SRF-TF 1.3e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g01053 - - cam:101502875 227.254