Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g01045 ATGAATATGTCAGATGGATATGAGAAGAATGAGGAACATGTTGAGGACTCATCAATGGGATCTTCACATAAGTgttcaatatcttttgatttGAATGAAGAAGCTAGTAGTGATCATCAAGGTATTATTAACAATGATATTGATGAGGCATGTGAGGATGAAGacaatggtgatgatgatggtgacGACGACGATGATGAGAAAACAAaggatgataatgataatgatgaaggTACTTCAAGCTCAACAAAAAGAAGTAGTGGATCAAATGAAAGAAGAAATGGTGTAAGACAATATGTTAGATCAAAGATGCCTAGACTTAGATGGACTCCTGATCTTCATCATTCATTTGTGCATGCTGTTGAAAGGCTTGGAGGCCAAGAGAGAGCAACACCCAAGTTGGTGCTTCAGCTGATGAATGTGAGAGGACTAAGCATTGCTCATGTCAAGAGTCACTTGCAGaTGTACCGGAGCAAAAAACTTGACGAGGTTGGACAAGTGCTAAGTCCAACACAAAGATCAACTCATGAACTAGGTTCCATTTCTCATGTAGCCCATCAATATTCCATGATGCCTCATCAACATTTCAAGATGGCAAATGGTGGAATTGTTCTAGAAACTAATTACAATCAAAACAATTATAATTTCCATAGTCTCCTTCATCCCTCATCCTTATCACATTCAAAGCCCATCAATTCAAGGCACAATCAATGGTACTTAAACCATCAACCTTTGAGACCAAGCTATGTGAGCAATGAAGTTATCTCCTCCTCAACAGCCTTACATCCGCAACAAGGAAGATCATCGGTAGCTTCGAGCCCGCAGCTTCAACTAATGGATACTACGGCCATTACAACACTTGCTCCCATGAGACCAAGCCAATTTCTTGAAGAGAAAAGATGGCCTCCATTAGATATCATGAACAATCATCAATACTTGAAGAAAAATTTACATACCATTAATGTTTCTACTTTTGGCTCCACTACAACATCACTTAGACCAGCTGAAGTGAGCTTTGGAAATAATACAAGATCCAGGGATCATCTATCAAACATCAATGAGCACCAACATTCTTTCAATAGTTCAAAGCTTCAATTTGATCCCCCATTTCGGATTAAGTTGAATGAAGAAACATTGGAGAAAGACAAAAAATGGGTGCCAGATTTGCAGCTGAGTTTAAGTCAAACAAGTAGCAACAATGATGGCAAGAGTGATCATGGTTTCAGAGAAACCAAAGAAATCAACACGAAACTCTCACTTTCTTAg 1266 0.3689 MNMSDGYEKNEEHVEDSSMGSSHKCSISFDLNEEASSDHQGIINNDIDEACEDEDNGDDDGDDDDDEKTKDDNDNDEGTSSSTKRSSGSNERRNGVRQYVRSKMPRLRWTPDLHHSFVHAVERLGGQERATPKLVLQLMNVRGLSIAHVKSHLQMYRSKKLDEVGQVLSPTQRSTHELGSISHVAHQYSMMPHQHFKMANGGIVLETNYNQNNYNFHSLLHPSSLSHSKPINSRHNQWYLNHQPLRPSYVSNEVISSSTALHPQQGRSSVASSPQLQLMDTTAITTLAPMRPSQFLEEKRWPPLDIMNNHQYLKKNLHTINVSTFGSTTTSLRPAEVSFGNNTRSRDHLSNINEHQHSFNSSKLQFDPPFRIKLNEETLEKDKKWVPDLQLSLSQTSSNNDGKSDHGFRETKEINTKLSLS 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g01045 421 Pfam Myb-like DNA-binding domain 107 157 IPR001005 -
Tsu02g01045 421 MobiDBLite consensus disorder prediction 47 72 - -
Tsu02g01045 421 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 105 160 IPR006447 GO:0003677
Tsu02g01045 421 PANTHER MYB-LIKE DNA-BINDING DOMAIN, SHAQKYF CLASS PROTEIN 3 421 - -
Tsu02g01045 421 MobiDBLite consensus disorder prediction 1 19 - -
Tsu02g01045 421 MobiDBLite consensus disorder prediction 80 95 - -
Tsu02g01045 421 MobiDBLite consensus disorder prediction 1 100 - -
Tsu02g01045 421 SUPERFAMILY Homeodomain-like 103 159 IPR009057 -
Tsu02g01045 421 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 3 421 IPR044848 GO:0003700
Tsu02g01045 421 MobiDBLite consensus disorder prediction 20 43 - -
Tsu02g01045 421 MobiDBLite consensus disorder prediction 392 421 - -
Tsu02g01045 421 Gene3D - 104 161 - -
Tsu02g01045 421 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 101 161 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g01045 Tsu-Chr2 8676877 8681808 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g01045 94 162 G2-like Transcription Factor Family AT2G42660 81.159 6.83e-34 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Tsu02g01045 Myb_DNA-binding 7.9e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g01045 - - mtr:MTR_8g086410 575.089