Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g01042 ATGAAACCCTTTTACAGATTCTTGATTCTCTTAACCTTATTTTCTTCAGTACAATCTTCATGTAAAAGTAAAGaccaaaaattaatttcaaaggCTTTAAAATCTGTCTCTGGCTTCAACTCTTCCACCTTGACATGTTCAGAGTCTCATATCACCAAAATAATTCTTCCCTCCAAAAACCTAAGTGGAACAATTTCATGGGGTTACCTCAAAAACATGTCAAAGTTACAAATTCTTGATCTCTCGGAAAATTCTCTACAAGGCCACATACCAAGCTGGTTTTGGTCAAGTTTTTCATCTTTATTGGAAGTGAATCTCTCAAGAAACAAATTCGGAGGAAGCATCAATAGCacttcattttcaatttcaaccatTCAAAAACTCAATCTCTCACACAACAGGTTTAGTAACATAGTTCAACTTTCTACCTTCCAAAACCTTAAAATCCTCGACCTATCGGACAACAACCTAAGAACACTTCCCTTAGGTTTTCAAAACCTTACAAAACTTCAACACCTTGATCTTTCAAGTTGCAATCTCAAAGATAGCGTAAaacccatttcttttttacactCACTTCATTACTTAGATTTATCAAACAACAATTTAACCGGTAATTTCCCTTCTGATTTTCCATCACTTAAAAATCTTAAATTCTTCAACATTTCAAACAACAACTTCATCTATCACAACAACACtccaaaccaaaatcaaaatcaaatcatcattcatagaaaaaaacaaaccaaacccaaatcaaaaaaattgattcttgcAATATGTTCTGCATTATCAACACTTGTTCTGGCTATGATTTCCATTTGGGTAATCCTAATTATTcataaaaagaagaaacaacGTTCTAAGATGAAGAAATGGGAAATTTCATTACCCGTTACGAAGAACACGATGAACACAAAGGTGGAGAAAACAGGGCCGTTTGAATTTGAAACAGAGTCAGGTTCAACATGGGTAGCAGATGTGAAAGAACCAACATCTGCACAAGTAGTGATGTTTGAGAAGCCATTGATGAACTTCACCTTCAAGGATCTCATCATTGCTACGTCACATTTCGGGAAAGAATCGCAGTTAGCAGAAGGAAGGTGTGGGCCTGTGTATTGGGCTGTTTTACCTGGTGAACTCCACGTGGCGATTAAGGTTCTTGAACATGCGAGAGACGTTGATTATGATGACTCTGTTGCTATGTTCGTTGACTTATCGAAGTTGAAGCATCCTAATTTGTTGACTCTCTCTGGTTACTGTATTGCAGGTAAGGAGAAGCTAGTGCTATATGAGTTTATGGCAAACGGTGATTTAGGTCGATGGCTACATGAGCTTCCAACAGGGGATACCAACGTTGAGGATTGGACTGACGACACATGGGAGTTGCAAACCGGCGTGGTGGAAGCATCCCCGAAAAAGATGGGTTGGTTGACACGCCACCGTATCGCGGTGGGGATAGCGCGTGGCCTCGCATATCTCCATCATGCGAGTTCAAAACCTATTGTGCATGGACACCTCGTCACCTCCAACATTTTGCTCACTAATGATTTGGAGCCTCGAATCTCCGATTTTGGATTGCATATCAACTCAAGTTCCAATGGTGGAACTAAGTATGATGTGTACTGCTTTGGAGTGGTGTTGATAGAGTTGCTTACCGGAAGGGTTGGCACAACGGAGACAATTGTTGCAGTTAGAAAGGTAGTGAAGGAGGAACAACACGTTAGAGTGCTTGATGAGAGGTTGCTACTCGAAGGCGATTCAATGGTGAGCGAGATGGTGGAGAGCCTCATAATTGCTTTTTTGTGCACGGCTGAGTCGCCTTCCAAGAGACCCTCCATGCAACAAGTTTTGGGATTACTCAAAGATATTCATCCTCATGAACCATCATTCTAA 1896 0.3755 MKPFYRFLILLTLFSSVQSSCKSKDQKLISKALKSVSGFNSSTLTCSESHITKIILPSKNLSGTISWGYLKNMSKLQILDLSENSLQGHIPSWFWSSFSSLLEVNLSRNKFGGSINSTSFSISTIQKLNLSHNRFSNIVQLSTFQNLKILDLSDNNLRTLPLGFQNLTKLQHLDLSSCNLKDSVKPISFLHSLHYLDLSNNNLTGNFPSDFPSLKNLKFFNISNNNFIYHNNTPNQNQNQIIIHRKKQTKPKSKKLILAICSALSTLVLAMISIWVILIIHKKKKQRSKMKKWEISLPVTKNTMNTKVEKTGPFEFETESGSTWVADVKEPTSAQVVMFEKPLMNFTFKDLIIATSHFGKESQLAEGRCGPVYWAVLPGELHVAIKVLEHARDVDYDDSVAMFVDLSKLKHPNLLTLSGYCIAGKEKLVLYEFMANGDLGRWLHELPTGDTNVEDWTDDTWELQTGVVEASPKKMGWLTRHRIAVGIARGLAYLHHASSKPIVHGHLVTSNILLTNDLEPRISDFGLHINSSSNGGTKYDVYCFGVVLIELLTGRVGTTETIVAVRKVVKEEQHVRVLDERLLLEGDSMVSEMVESLIIAFLCTAESPSKRPSMQQVLGLLKDIHPHEPSF 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g01042 631 SUPERFAMILY L domain-like 43 231 - -
Tsu02g01042 631 Gene3D Ribonuclease Inhibitor 120 242 IPR032675 -
Tsu02g01042 631 SUPERFAMILY Protein kinase-like (PK-like) 332 619 IPR011009 -
Tsu02g01042 631 Pfam Protein tyrosine and serine/threonine kinase 361 531 IPR001245 GO:0004672|GO:0006468
Tsu02g01042 631 PRINTS Leucine-rich repeat signature 147 160 - -
Tsu02g01042 631 PRINTS Leucine-rich repeat signature 190 203 - -
Tsu02g01042 631 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 238 627 - -
Tsu02g01042 631 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 3 227 - -
Tsu02g01042 631 Gene3D Phosphorylase Kinase; domain 1 318 433 - -
Tsu02g01042 631 Gene3D Transferase(Phosphotransferase) domain 1 532 629 - -
Tsu02g01042 631 Gene3D Transferase(Phosphotransferase) domain 1 434 531 - -
Tsu02g01042 631 ProSiteProfiles Leucine-rich repeat profile. 146 168 IPR001611 GO:0005515
Tsu02g01042 631 ProSiteProfiles Leucine-rich repeat profile. 124 145 IPR001611 GO:0005515
Tsu02g01042 631 ProSiteProfiles Protein kinase domain profile. 358 628 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu02g01042 631 PANTHER KINASE, PUTATIVE-RELATED 238 627 - -
Tsu02g01042 631 PANTHER KINASE, PUTATIVE-RELATED 3 227 - -
Tsu02g01042 631 Pfam Leucine rich repeat 124 180 IPR001611 GO:0005515
Tsu02g01042 631 Pfam Leucine Rich Repeat 192 214 IPR001611 GO:0005515
Tsu02g01042 631 SMART LRR_typ_2 144 166 IPR003591 -
Tsu02g01042 631 SMART LRR_typ_2 167 191 IPR003591 -
Tsu02g01042 631 SMART LRR_typ_2 73 97 IPR003591 -
Tsu02g01042 631 Gene3D Ribonuclease Inhibitor 11 119 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g01042 Tsu-Chr2 8659772 8662317 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g01042 51 624 Receptor kinase-like Gene Family AT5G07280 31.587 1.52e-71 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-2 Tsu02g01042 PK_Tyr_Ser-Thr 1.9e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g01042 - - gmx:100788556 812.372
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g01042 02 8659772 8662317 Tsu08g03930 08 57620947 57624991 PCT