Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g01039 ATGGATCCAGCAACAAGCAAAGGTAGTGGTGAAATGTTGGATCATGTTGATAAAAGGGTTTATGAGAATTTGAGTAATTTGGTTGAAGGAGTTGCAACTGATTCAGGAGCTGGATGTAGCTTGGGTGATAGGGTTAGTGTATTGGGTGAAGATCGGAATTCAGAAGAGACTTGCAGCAATGATCTTGGATTGAATGAGGAGTTAAAGGAGAGACCTTTAGAAGATAAGGGTCAGAATCAGAATGTTGATGTTGATCCCCGAAAAATCAATGATGAATTGCACATGGTTGATCAAGGGACTAGTTATAATTCAAGTAATTCGGTTAATGGCGAAGCACTTGAGACCTGTGTTGCAATAGTTTCTTCTGCTCAGGTTGAGTGTATTAATGGTGGAGATAATAGAAAATCGGAAGCTAAAACTAATGAATCGGGGTTGCACATGTTATCGATTAAAACACCTAAAGGGGTGTCTGAAACTGATAAAAATTCATGTGTGATTGATATGAACTATGGTGGCTGCAGAGATTTTAGCGAGAATTCGGATGGTGAAATGATTTGTAGGATTTGCCATCTGGCCTCTGGGCAACCGTTAGAAGCAACTGCTGTTGGAACTCCAAACAGTgttaatgataatgataaaacAGGTTTGATTATGCTTGGTTGTGCGTGTAAAGACGAGCTAGGCATTGCACACAAGCATTGCGCTGAGGCATGGTTCAAGATTAAAGGAAACAGGTTGTGTGAAATATGCGGCGAGACAGCAAAAAATATTTCCGAAGTTACTGATAATGGATTTATGGAAGAATGGTGTGAAAGTGGATTCATCGACAATAGTAATACATCACACCGCAGCTTGGTTGGATGCTGGACCGGGCAACCATTCTGTAACTTCTTGATGGCATGCCTGGTAATAGCTTTTGTTCTGCCATGGTTCTTTCGTGTAAAGATGTTCTAG 954 0.4015 MDPATSKGSGEMLDHVDKRVYENLSNLVEGVATDSGAGCSLGDRVSVLGEDRNSEETCSNDLGLNEELKERPLEDKGQNQNVDVDPRKINDELHMVDQGTSYNSSNSVNGEALETCVAIVSSAQVECINGGDNRKSEAKTNESGLHMLSIKTPKGVSETDKNSCVIDMNYGGCRDFSENSDGEMICRICHLASGQPLEATAVGTPNSVNDNDKTGLIMLGCACKDELGIAHKHCAEAWFKIKGNRLCEICGETAKNISEVTDNGFMEEWCESGFIDNSNTSHRSLVGCWTGQPFCNFLMACLVIAFVLPWFFRVKMF 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g01039 317 PANTHER ZINC FINGER, RING-CH-TYPE 1 317 - -
Tsu02g01039 317 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MARCH-RELATED 1 317 - -
Tsu02g01039 317 SUPERFAMILY RING/U-box 182 253 - -
Tsu02g01039 317 MobiDBLite consensus disorder prediction 51 84 - -
Tsu02g01039 317 SMART ringv_2 185 251 IPR011016 GO:0008270
Tsu02g01039 317 Pfam RING-variant domain 214 250 IPR011016 GO:0008270
Tsu02g01039 317 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 171 262 IPR013083 -
Tsu02g01039 317 ProSiteProfiles Zinc finger RING-CH-type profile. 178 257 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g01039 Tsu-Chr2 8638738 8641278 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g01039 166 312 C3H Transcription Factor Family AT5G05830 40.523 1.87e-26 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g01039 - - gmx:100791129 427.943
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g01039 02 8638738 8641278 Tsu08g03925 08 57576806 57579461 PCT