Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g01019 ATGCTTCATGAAAGAGAATACATCTCTATTTTCATTCTCTTCATGATATCCACTTTTTTCTTACCAACAACCTTAACAGCTGACACAGATGCTCAAATACTAATGAATTTCAAAAGTTTCTTGTCTAATGCAGATGCATTAAACAATTGGAGTAACAATTCTATTAATGTGTGCACATGGAATGGTTTAATATGCAAAAATCAAACACTTCATGGTTTGAGACTAGAAAATATGGGACTAAGTGGAACAATTAATGTAGACATACTTATGAGTTTGTCCACTTTGAGAAGTTTTAGtgtcattaataataattttgaggGTCCAATTCCTGCATTTAATAAACTTGTGGGATTAAGGGCATTGTTTTTGACTAATAATAAATTCTCTGGTGAAATTTCTGATGATGCTTTTGAAGGATTAAGAAGGCTTAGAAGAGTAGTCTTAGCAGAAAATGGATTTAAGGGTCATATTCCTAATTCTCTTGCTAAATTGCCTAGACTTAATGATGTTGATTTACATGGAAATAGCTTTGATGGTAATATACCAGAATTTCTACAAAGTGATTTCAGAGTGTTTAACTTGTCTAACAATCAATTGGAGGGTACAATACCAGAAAGCTTAAGAAATCAGGATCCAAGTTCTTTTGCAGGAAACAAAGGTCTATGTGGAAAACCTCTAAGCATCTCCTGCAACCAAAGCCAAAGccgtgaagaagaaaaagatggaGAACACAAGCCACCCCGTGTTCTTATTAGTGTTATTGTATTTGTGATTGTGCTTGTATTGGCTTCAATACTAGCACTTTTATTCATCCGTTACCGTAGAAAGAAAACTGCAGAAAAATCCAAATGGAATAAGGAAAATTCACAATCACAGTCTCAGAACACGAACTCTAGTATAGTTTCCACTAGTGAAGCCAAATCCATTACAATTGAAtccaagaaaaacaaagacGAAGATTTGAACTTCGTTAGCAGCGAAAGGGTTGAGTTTGATTTGCAAGATTTGTTAAGAGCCTCAGCTGAGGTTTTAGGAAGTGGAAGTTTTGGATCAACATACAAGGCTATGGTATTGAGTGGACCAGTAGTTGTTGTGAAAAGATTTAAGCACATGAACAAAGTTGGCAAAAAAGAGTTCTATGATCATATGAGAAGGCTTGGAAGTTTGACGCATCCTAATCTACTTCCTCTTGTTGCATTCTACTATGGAAAAGATGAGAAGCTTTTGATACATGATTTTGCAGAAAATGGTAGCTTGGCTAGTCATCTTCATGGTAAACATGGTTGCGAGTTGGATTGGCCAACACGTTTGAAGATAATAAAAGGAGTGGCTAGAGGTTTAGCTTACCTTTATAGAGAGTTTCCCGACGAAAAGCTACCACATGGACATCTAAAATCGTCGAATGTTGTGTTAGACCATTCATTTGAGCCTCGTTTAGCCGAATATGGACTGGTAGCAGTAACTGATTTAAAACATGCTCAGCAGTTCATGGTAGGTTTCAAGTCTCCAGAGGTGAGTCAAAATGAAGTGCCAAGCGAGAAGAGCGACGTATGGTGTTTAGGGATACTGATATTGGAGCTACTGACAGGGAAGTTCCCTGCAAATTATTTGAGGCATGGGAAGGGAGCAACGGAGGATTTGGCAATGTGGGTGGAATCTATAGTGAGGGAAGGGTGGAGTGGAGAAGTGTTGGATAAAAGCATTGGTGGAAGTAGGGGTGAAGAGGGTGAAATGTTGAAGTTGTTGGGGATTGGACTGAGTTGTTGTGAATGGAGTTTGGAGAATAGGTTTGGTTGGAAAGAGGCAGTGGCTAAGATTGAGGAGTTGAAGGAAAGAGATCATGTTGGTGTTGGAGTTGATCAGAGTCAGGACTCTGAATTGTCTCTTTGA 1890 0.3698 MLHEREYISIFILFMISTFFLPTTLTADTDAQILMNFKSFLSNADALNNWSNNSINVCTWNGLICKNQTLHGLRLENMGLSGTINVDILMSLSTLRSFSVINNNFEGPIPAFNKLVGLRALFLTNNKFSGEISDDAFEGLRRLRRVVLAENGFKGHIPNSLAKLPRLNDVDLHGNSFDGNIPEFLQSDFRVFNLSNNQLEGTIPESLRNQDPSSFAGNKGLCGKPLSISCNQSQSREEEKDGEHKPPRVLISVIVFVIVLVLASILALLFIRYRRKKTAEKSKWNKENSQSQSQNTNSSIVSTSEAKSITIESKKNKDEDLNFVSSERVEFDLQDLLRASAEVLGSGSFGSTYKAMVLSGPVVVVKRFKHMNKVGKKEFYDHMRRLGSLTHPNLLPLVAFYYGKDEKLLIHDFAENGSLASHLHGKHGCELDWPTRLKIIKGVARGLAYLYREFPDEKLPHGHLKSSNVVLDHSFEPRLAEYGLVAVTDLKHAQQFMVGFKSPEVSQNEVPSEKSDVWCLGILILELLTGKFPANYLRHGKGATEDLAMWVESIVREGWSGEVLDKSIGGSRGEEGEMLKLLGIGLSCCEWSLENRFGWKEAVAKIEELKERDHVGVGVDQSQDSELSL 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g01019 629 Gene3D Ribonuclease Inhibitor 28 137 IPR032675 -
Tsu02g01019 629 SUPERFAMILY Protein kinase-like (PK-like) 342 608 IPR011009 -
Tsu02g01019 629 PANTHER LRR RECEPTOR-LIKE KINASE 15 615 - -
Tsu02g01019 629 ProSiteProfiles Protein kinase domain profile. 338 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu02g01019 629 MobiDBLite consensus disorder prediction 281 301 - -
Tsu02g01019 629 ProSitePatterns Protein kinases ATP-binding region signature. 344 366 IPR017441 GO:0005524
Tsu02g01019 629 Pfam Leucine rich repeat 117 176 IPR001611 GO:0005515
Tsu02g01019 629 Pfam Leucine rich repeat N-terminal domain 27 65 IPR013210 -
Tsu02g01019 629 Gene3D Transferase(Phosphotransferase) domain 1 414 625 - -
Tsu02g01019 629 SUPERFAMILY L domain-like 35 210 - -
Tsu02g01019 629 Pfam Protein kinase domain 341 536 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu02g01019 629 MobiDBLite consensus disorder prediction 285 301 - -
Tsu02g01019 629 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 15 615 - -
Tsu02g01019 629 Gene3D Phosphorylase Kinase; domain 1 302 413 - -
Tsu02g01019 629 Gene3D Ribonuclease Inhibitor 138 232 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g01019 Tsu-Chr2 8481447 8483823 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g01019 1 616 Receptor kinase-like Gene Family AT4G31250 44.697 0.0 545
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Tsu02g01019 Pkinase 2.5e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g01019 - - gmx:100803999 840.106