Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g01003 ATGGCTAATATAACCACCGAAGCCGTTTTAGATGTAAGCAAGGATTCCTCCCAAACATGTCAAGACTCAGACTCTTATGTCTCTGTTCCTTTCTTGCAAAAGTTAATAGCAGAATTGGTGGGCACATATTTCTTGATATTTGCGGGATGTGCTTCAATTGTGGTGAACAAGAACAATGACAACGTGGTCACACTTCCTGGAATTGCTATTGTTTGGGGACTTGCTTTGGTTGTATTGATTTATTCTCTTGGTCATATTTCTGGTGCTCATTTCAACCCTGCTGTTACTATTGCTTTTGCTACCACTAGGAGGTTTCCATTGTTACAGGTGCCAGCTTATATATCAGCTCAACTTCTGGGAGGTACACTTGCTAGTGGaactctaaaattaattttcagtGGCCACCTTGATCAGTTTCCAGGAACAATTCCATCTGGGTCTGATCTTCAAGCTTTTGCACTTGAATTCGTAGTCACATTTTACCTTATGTTTATTATTTCTGGAGTTGCCACCGATAATAGAGCGatTGGTGAGTTGGCTGGAATTGCAATTGGATCTACATTATTGCTTAATGTGATCATTTCAGGaCCGATAACAGGAGCGTCGATGAACCCAGTTAGAAGCCTAGGACCTGCTTTTGTACACAATAAATACTCAGGAATATGGGTATATATATTTTCACCAATTTTGGGGGCCATTGCCGGAGCATGGGCTTATAACATTGTTAGGTACACTAACAAGTCGGTTCGCGAGATCACCAAGAGTGCTTCCTTCCTCAAAGAAGCCGGGCGTGGTGGACGCCAAGTAGTTTAA 813 0.4121 MANITTEAVLDVSKDSSQTCQDSDSYVSVPFLQKLIAELVGTYFLIFAGCASIVVNKNNDNVVTLPGIAIVWGLALVVLIYSLGHISGAHFNPAVTIAFATTRRFPLLQVPAYISAQLLGGTLASGTLKLIFSGHLDQFPGTIPSGSDLQAFALEFVVTFYLMFIISGVATDNRAIGELAGIAIGSTLLLNVIISGPITGASMNPVRSLGPAFVHNKYSGIWVYIFSPILGAIAGAWAYNIVRYTNKSVREITKSASFLKEAGRGGRQVV 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g01003 270 ProSitePatterns MIP family signature. 90 98 IPR022357 -
Tsu02g01003 270 Gene3D Glycerol uptake facilitator protein. 3 256 IPR023271 -
Tsu02g01003 270 Pfam Major intrinsic protein 27 239 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu02g01003 270 PANTHER AQUAPORIN NIP2-1 5 264 IPR034294 -
Tsu02g01003 270 TIGRFAM MIP: MIP family channel proteins 37 239 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu02g01003 270 CDD MIP 33 242 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu02g01003 270 SUPERFAMILY Aquaporin-like 27 252 IPR023271 -
Tsu02g01003 270 PANTHER NODULIN-26 5 264 - -
Tsu02g01003 270 PRINTS Major intrinsic protein family signature 222 242 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu02g01003 270 PRINTS Major intrinsic protein family signature 72 96 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu02g01003 270 PRINTS Major intrinsic protein family signature 33 52 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu02g01003 270 PRINTS Major intrinsic protein family signature 185 207 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu02g01003 270 PRINTS Major intrinsic protein family signature 154 172 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu02g01003 270 PRINTS Major intrinsic protein family signature 109 128 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g01003 Tsu-Chr2 8375300 8378493 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g01003 3 260 Major Intrinsic Protein MIP AT5G37810 53.409 6.46e-99 289
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g01003 K09874 - gmx:100813448 410.994
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g01003 02 8375300 8378493 Tsu08g03868 08 57003335 57006046 PCT