Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g01002 ATGGATGAAAATTCAGCTAACAATGGAACCAATGAGGTTGTTTTGAACCTCGACAAGGATGTCCCTAATGTAACTGAAGACTCAAGCTCCTATGCCACTGCTTCTTTCTTGCAAAAGTTGGTAGCTGAGGTGGTAGGCACATATTTCTTGATATTTGCCGGTTGTGCATCTGTCGCGGTGAACAAGAACAACGATAACGTCGTGACACTTCCCGGAATTTCAATTGTCTGGGGACTTGCTGTAATGGTGCTAGTTTATTCTCTTGGTCATATCTCTGGTGCTCATTTCAATCCTGCTGTTACCATTGCTTTTGCTACCACAAGAAGGTTTCCCTTCAAACAGGTACCAGCTTATGTAGTAGCTCAAGTTCTTGGATCTACACTTGCAGCTGGAACTCTTAGACTATTATTTAGTGGCAAAGATGATCAATTTGTAGGAACACTTGCAGCAGGGTCTAATCTTCAAGCTTTTGTGACTGAATTCATAATCACCTTTTATCTTATGTTTATCATATCTGGAGTTGCCACTGATAATAGAGCAATTGGTGAATTGGCTGGGATTGCTGTTGGATCTACAGTACTTTTGAATGTGATGTTTGCAGGGCCAATCACAGGAGCATCAATGAATCCAGCAAGAAGCATAGGACCTGCATTTGTACACAATGAATACAAAGGAATATGGATATACTTAGTGTCTCCAATTCTAGGAGCCGTGGCCGGTGCATGGGTTTATAACGTCATTCGGTACACCGATAAGCCAGTTCGTGAGATCACCAAGAGTGCATCTTTCCTAAAAGCAGCAAAGCCATAG 810 0.421 MDENSANNGTNEVVLNLDKDVPNVTEDSSSYATASFLQKLVAEVVGTYFLIFAGCASVAVNKNNDNVVTLPGISIVWGLAVMVLVYSLGHISGAHFNPAVTIAFATTRRFPFKQVPAYVVAQVLGSTLAAGTLRLLFSGKDDQFVGTLAAGSNLQAFVTEFIITFYLMFIISGVATDNRAIGELAGIAVGSTVLLNVMFAGPITGASMNPARSIGPAFVHNEYKGIWIYLVSPILGAVAGAWVYNVIRYTDKPVREITKSASFLKAAKP 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g01002 269 CDD MIP 38 247 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu02g01002 269 Pfam Major intrinsic protein 33 244 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu02g01002 269 PRINTS Major intrinsic protein family signature 38 57 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu02g01002 269 PRINTS Major intrinsic protein family signature 77 101 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu02g01002 269 PRINTS Major intrinsic protein family signature 114 133 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu02g01002 269 PRINTS Major intrinsic protein family signature 159 177 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu02g01002 269 PRINTS Major intrinsic protein family signature 190 212 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu02g01002 269 PRINTS Major intrinsic protein family signature 227 247 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu02g01002 269 SUPERFAMILY Aquaporin-like 33 258 IPR023271 -
Tsu02g01002 269 TIGRFAM MIP: MIP family channel proteins 42 244 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu02g01002 269 Gene3D Glycerol uptake facilitator protein. 2 259 IPR023271 -
Tsu02g01002 269 PANTHER MAJOR INTRINSIC PROTEIN (MIP) FAMILY TRANSPORTER 1 267 - -
Tsu02g01002 269 ProSitePatterns MIP family signature. 95 103 IPR022357 -
Tsu02g01002 269 PANTHER AQUAPORIN NIP2-1 1 267 IPR034294 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g01002 Tsu-Chr2 8370828 8372767 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g01002 28 269 Major Intrinsic Protein MIP AT5G37810 59.917 5.66e-106 307
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g01002 K09874 - gmx:100798526 441.425