Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g01000 atgaaatttccATTTTTTAGTACATTGAAGGGGCTCAACCTTCCTGGCACACTTCCGCCTCAATTGGTTAAGCTTCCGTATCTCAAAGAAATTGATTTTGCTTTGAACTACCTAAATGGTACAATCCCGAAGGAATGGGCTTCAACTGAACTAACTTCAATCTCGCTACTTGTTAATCGTTTATCAGGGGAGATTCCTAAGGAGTTGGGAAATATTACCACTCTAACATACCTGAACCTTGAAGCAAACCAATTTGTCGGTCTTGTTCCCTCTGAACTTGGAAGTCTATCTAACCTGCAGACTTTGATTCTATCATCCAATAAATTGTCTGGGAACTTACCAGTGACATTAGCTAAGTTACATAACTTAACAGATTTTAGGATAAATGATAATAGTTTCAATGGAAAAATACCTAGCTTCATAACGACTTGGCAACAGCTTCAAAGACTAGAAATGCATGCAAGTGGACTGGAGGGACCTATCCCGTCAACTATATCTCATTTGACTAATTTATCTCAACTGAGGATTAGTGACATAAATGGTCCAAGTCAGGATTTTCCTAGTTTAAGCAACATGTCAGGAATGATAAGATTGATTTTGAGGAATTGCAATATAACTGGAAAGATTCCTAGCTATTTCTGGACAATGAAGAGTTTGGAAATGTTGGATCTAAGTTTCAATAATATGTTTGGTGAAATACCGGCGATGGTACATGTGGGACATCTGAGATTTTTATTCCTAACTGGCAACAAGCTAAGTGGTAATGTACCTGACTCAATCTTGATGGATGGAAGCAATGTTGATCTTTCTTACAACAACTTTACATGGCAAGGACCTGGGAAAACTACATGTGCAGATTATCTGAATTTAAACCTAAACTTGTTCCGGAGCTCGTCAGGGACCAATGCATTACAAGGAGTTCTTCCATGTTCACAAACTCTCACATGTCCTAGATattcaagttgtttgcaTGTTAATTGTGGTGGAAACAATATACAGGTGAgggaaaatggtaaaaatatcCTCTATATTGGAGATGGAGATGTGACGGGGGGTGCTGCTAAATATTATGTTGATTATGTAAATCATTGGGGTTTTAGTAGCACTGGGGACTACATGGATGACGGTGATTTCCAAAATACACGTTACTCTAGGTCTTTGTCATCATCAAGTATGCCATTGCCAGAAATATATACAACCGCTCGTGCTGCTCCCATTTCGCTTACTTATTTTCAGTATTGCTTGGAAAATGGGAAATATACCGTTCATCTCCACTTTGCAGAAATACAATTTACAAACGATAAGACATATAGACGTCTTGGGAAGCGCTTATTTGATATCTATGTTCAgGGAATATTAGTTTGGAAGGATTTTAATATTGAAGATGAATCACACCTTGCTCAAAAACCACGTATATTATCGGCAAATAATGTCACTGTAATAGATGGTATTCTAGAGATTCGATTCTACTGGGCTGGCAAAGGGACTACAAGGATTCCTGTTTCTGGAGTTTATGGTCCCCTTATATCAGCTTTCTCTATTGTTTCGGATTCTAAACCTTGTTCAGACCAAAAGAATGGAAGCCGTAAATTAGTCATTGGAGTAGGATTTGGAGTTACAGCAGTGTGCCTAGTCCTTATTGTGGTAGGCATTTTTTggaggaaaggctacatcaaagGAATAACTAGAAGAGAAAAAGTTTTCAAAGGGCAAGATTTTCAGATGAGGACATTTACGTTAAAACAAATTAGAGCCGCCACAGATGGATTCAGTCCTGCTAATAAGGTTGGGGAAGGTGGTTTTGGTCCTGTCTACAAGGGCCAATTACCTGACGGTACATGGGTAGCAGTCAAACAGCTATCCTCGAAGTCCCGCCAGGGAAACCGTGAATTTTTAAATGAGATAGGCATGATATCTTGTTTTCAACATCCTAATCTTGTTAAACTTCAAGGATGTTGCATTGAAGGGGATCAATTAATATTGGTGTATGAGTACATGGAAAATAATAGCCTGGCACGTGCTTTATTCAGTTCAGACAATCAGCTTAAACTTGATTGGCCATCAAGGCTTAGGATCTGCATTGGCATTGCAAAAGGTCTAGCATTTCTTCACGAAGAATCAAGACTCAAGGTCGTTCATCGAGATATCAAAGCTACTAACGTGTTACTGGATGGTAATTTAAACCCTAAAATATCTGATTTTGGGTTGGCTAGGCTTGATGAAGAGGAGAAGACCCATATAATCACCCGAGTTGCAGGCACAGTGTGA 2268 0.3783 MKFPFFSTLKGLNLPGTLPPQLVKLPYLKEIDFALNYLNGTIPKEWASTELTSISLLVNRLSGEIPKELGNITTLTYLNLEANQFVGLVPSELGSLSNLQTLILSSNKLSGNLPVTLAKLHNLTDFRINDNSFNGKIPSFITTWQQLQRLEMHASGLEGPIPSTISHLTNLSQLRISDINGPSQDFPSLSNMSGMIRLILRNCNITGKIPSYFWTMKSLEMLDLSFNNMFGEIPAMVHVGHLRFLFLTGNKLSGNVPDSILMDGSNVDLSYNNFTWQGPGKTTCADYLNLNLNLFRSSSGTNALQGVLPCSQTLTCPRYSSCLHVNCGGNNIQVRENGKNILYIGDGDVTGGAAKYYVDYVNHWGFSSTGDYMDDGDFQNTRYSRSLSSSSMPLPEIYTTARAAPISLTYFQYCLENGKYTVHLHFAEIQFTNDKTYRRLGKRLFDIYVQGILVWKDFNIEDESHLAQKPRILSANNVTVIDGILEIRFYWAGKGTTRIPVSGVYGPLISAFSIVSDSKPCSDQKNGSRKLVIGVGFGVTAVCLVLIVVGIFWRKGYIKGITRREKVFKGQDFQMRTFTLKQIRAATDGFSPANKVGEGGFGPVYKGQLPDGTWVAVKQLSSKSRQGNREFLNEIGMISCFQHPNLVKLQGCCIEGDQLILVYEYMENNSLARALFSSDNQLKLDWPSRLRICIGIAKGLAFLHEESRLKVVHRDIKATNVLLDGNLNPKISDFGLARLDEEEKTHIITRVAGTV 755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g01000 755 Gene3D Ribonuclease Inhibitor 7 112 IPR032675 -
Tsu02g01000 755 Gene3D Ribonuclease Inhibitor 113 182 IPR032675 -
Tsu02g01000 755 ProSitePatterns Serine/Threonine protein kinases active-site signature. 711 723 IPR008271 GO:0004672|GO:0006468
Tsu02g01000 755 Gene3D Ribonuclease Inhibitor 183 293 IPR032675 -
Tsu02g01000 755 Pfam Malectin domain 322 512 IPR021720 -
Tsu02g01000 755 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 5 754 - -
Tsu02g01000 755 SUPERFAMILY Protein kinase-like (PK-like) 573 754 IPR011009 -
Tsu02g01000 755 Gene3D Transferase(Phosphotransferase) domain 1 666 755 - -
Tsu02g01000 755 PANTHER RECEPTOR-LIKE KINASE IN FLOWERS 1-RELATED 5 754 - -
Tsu02g01000 755 Gene3D Phosphorylase Kinase; domain 1 558 665 - -
Tsu02g01000 755 Pfam Protein tyrosine and serine/threonine kinase 594 744 IPR001245 GO:0004672|GO:0006468
Tsu02g01000 755 ProSiteProfiles Protein kinase domain profile. 590 755 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu02g01000 755 Gene3D - 320 519 - -
Tsu02g01000 755 SUPERFAMILY L domain-like 9 259 - -
Tsu02g01000 755 SMART serkin_6 590 749 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g01000 Tsu-Chr2 8355703 8361864 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g01000 1 755 Receptor kinase-like Gene Family AT1G29750 61.162 0.0 923
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Tsu02g01000 Malectin 1.1e-37 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g01000 - - vra:106779815 1086.25