Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00991 ATGAGTTTTCCAAACGAATCCATGCCAGATTCTCCACAAAGAAATTCAGCTATGAAGATTGGAAGGGGAAAGATTGAGATCAAGCGAATCGAAAACACAACAAATCGTCAAGTTACTTTTTGTAAGCGTCGAAATGGCTTGCTTAAGAAGGCATATGAACTATCCGTTCTTTGTGATGCCGAAGTTGCTCTTATAGTCTTCTCGACTCGCGGCCGTCTCTATGAATATGCAAATAACAGTGTGAAAGCATCTATTGAGAGGTACAAGAAAGCATGTTCAGATTCTTCTGGTGCTAAATCAGCTTCTGAGTCTAATGTTCAGTTTTACCAGCAAGAATCTGCCAAACTGCGAGTCCAAATCAGTAATTTGCAGAATCACAACAGGCAAATGATGGGTGAAGCTTTGAGCAATATGAATGGTAAGGATctcaaaaaccttgagactaaATTAGAGAAAGGAATTAACCGAGTTCGCTCCAAGAAGAATGAAATGCTGTTTGCAGAACTTGAGTACATGCAGAAGAGGATATCAGAAAGTGAGAGGAGCCACCAAAATGTTAATGTGTTTCCTGGAGGCACAAACTTTGAATGTATGCAACCTCAACCTCAGCAGCAGCAGTTCGACTCTCGAGGCTATTTCCAAGTGAACGAATTACAGCCTAATGATCAGTATGCTAGGCAAGACCAGATGTCTCTTCAATTTGTTTGA 708 0.3969 MSFPNESMPDSPQRNSAMKIGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANNSVKASIERYKKACSDSSGAKSASESNVQFYQQESAKLRVQISNLQNHNRQMMGEALSNMNGKDLKNLETKLEKGINRVRSKKNEMLFAELEYMQKRISESERSHQNVNVFPGGTNFECMQPQPQQQQFDSRGYFQVNELQPNDQYARQDQMSLQFV 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00991 235 Pfam K-box region 102 185 IPR002487 GO:0003700|GO:0005634|GO:0006355
Tsu02g00991 235 ProSiteProfiles MADS-box domain profile. 20 80 IPR002100 GO:0003677|GO:0046983
Tsu02g00991 235 SUPERFAMILY SRF-like 21 92 IPR036879 GO:0003677|GO:0046983
Tsu02g00991 235 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 29 76 IPR002100 GO:0003677|GO:0046983
Tsu02g00991 235 Gene3D - 32 103 IPR036879 GO:0003677|GO:0046983
Tsu02g00991 235 PANTHER MADS BOX PROTEIN 14 229 - -
Tsu02g00991 235 PANTHER AGAMOUSB 14 229 - -
Tsu02g00991 235 Coils Coil 106 126 - -
Tsu02g00991 235 CDD MADS_MEF2_like 21 95 IPR033896 GO:0000977|GO:0045944
Tsu02g00991 235 ProSitePatterns MADS-box domain signature. 22 76 IPR002100 GO:0003677|GO:0046983
Tsu02g00991 235 Coils Coil 143 163 - -
Tsu02g00991 235 PRINTS MADS domain signature 42 57 IPR002100 GO:0003677|GO:0046983
Tsu02g00991 235 PRINTS MADS domain signature 22 42 IPR002100 GO:0003677|GO:0046983
Tsu02g00991 235 PRINTS MADS domain signature 57 78 IPR002100 GO:0003677|GO:0046983
Tsu02g00991 235 ProSiteProfiles K-box domain profile. 106 201 IPR002487 GO:0003700|GO:0005634|GO:0006355
Tsu02g00991 235 SMART madsneu2 20 79 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00991 Tsu-Chr2 8281732 8287149 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g00991 16 235 MADS-box Gene Family AT3G58780 60.759 6.44e-96 279
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Tsu02g00991 K-box 3.8e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00991 K09264 - gmx:732595 333.183
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g00991 02 8281732 8287149 Tsu08g03848 08 56820379 56828677 PCT