Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00987 ATGGGAATCCAAGGTCTATTACCGCTACTCAAATCCATAATGGTTCCAATTCACATCAAAGACCTTCACGGTTGTTCTGTCGCCATCGACACCTATTCCTGGCTTCACAAAGGCGCCCTTTCTTGTAGCACTGACCTCTGTAAAGGAATACCCACTTCTAGGCATATTGAGTATTGTATGCACAGAGTCAATTTGCTTCGCCATTATGGTGTTAAGCCTATTCTTGTATTTGATGGAGGTCTTTTACCAATGAAGATTGAACAAGAGAATAAGCGTGCAAGGTCTAGAAAGGATAACTTTGAACGTGCAGTTGAACATGAATCAAATGGAAATTCTTCAGCTGCGTATGAATGCTACCAGAAAGCTGTTGATATTTCACCTCTGATTGCACGAGAACTGATTCAGGTATTGAAGCAGGAGAATGTACAGTATATTGTTGCTCCTTACGAGGCAGATGCTCAAATGACGTTCTTGGCAGTTAGCAGACAGGTTGATGCAGTTATAACAGAGGACTCTGATCTTATACCGTTTGGTTGCCCAAGAATTATCTTTAAAATGGACAAGTTTGGTCAAGGTGTTCAGTTTCAGTCTTCCATGCTACAAAAGAATAAGGAGCTTAATTTTGAAGGGTTCAACAGACAAATGCTTCTTGAAATGTGTATTTTGAGTGGCTGTGACTATCTTCCGTCCTTGCCAGGTATGGGTCTCAAAAAGGCCCATGCAAGCATTAAAAGATTTAAAAGTTACGACAAGGTTCTTAAGCACTTAAAATACAGTGGTGTTTCTGTACCTCCCCTCTATGAAGAGTCATTCAGGAAGGCTATACTTACTTTCCAATATCAACGAGTTTATGATCCAGTTAGTGAAAGTATTGTCCATTTGGCTAATATACCCGAGGATATTGGTGACGAGTTAGACTTTTTAGGCCCACCCTTGCCAAAAGATATAGCACAAGGAATAGCAGAAGGTGATCTTGATCCAATTACCAAAATTCCATTTGAGGGAGATAAGTTTGTTGCCAGATTGGAAATTGCAGGAACTAGTCAATTCAAaacacttaattctgagagggGGAAGAAAAGGATTGATCTGCCTGTGCAGAAGAATCTCTTGACCAAGTATTTCTGTTTTGCATCTCTTGAAGCAAAGAGGGAATTCAAAGCGCCTAGAACGTCACCTACTATTGCTAATCAAAGTACACTGATTTCCTCTTCGGTCAATTCCCTAGAACATCAGACTTTAGAAGCCGCTGTTGGTGAAACAATGAACTCTGCTGCACCCACAGTTGACCCTGAGAGTTGTAGCAATGACTCTCCTCCTAATTGCTATATTGAAAACCATTTTTCCACCAAAAATTCAGAGCTTATAGAATCACAATATCACGCAGAGAAGAAGGGAAGTCCTGATCATACAATATTGAGACAGCCTAGACAGCCAATTCATAAACCTTGTCTGGGGTTACATAAAGAGCACGAGTTCACAAATGTTCAAGACAAAGTCGAAGAAAAAACCAAGGAGACAAAAAGAAAGGTAATTGTAAGGAGTCCTTATTTTCCGCAGAAGCAAGTGGAAAAGAGTGCCCCTGATGAGAAACAAGAGCAGCTGGTCTCTGGCACCGTCATTGATGAGAGAAAAAAAGCCATATATGGCGGAGATTTATGTAACAACCAATTGAAGACTAACGACTTGAAAAGGAAGGTTTCCCCTAATGATAGTATTCAAAGTGAAAATTTGCAGGCCAGGCAAATGCATCCTACTTCATCTACTCATGAAAATgGTTGCTCTGATCAtaatgttgaagaagaaaaatttggAACAAACATTTCCCATATAGGCCATTATTCAGAAATAGCTGAGAAGTCTTTGGACAGATTTGCCTCCGTAATATCGGCTTTTAAATATACCTCTGGCTCTCGTGTCAGTGGTCTCCGTGCTCCTCTGAAAGATGTCCGCAACACCCGTAATAATAGGCCAGCAGCTGTGGATTTCAACCAATTTGCATATGTGCCAAAACCAACAAAGACTAGAAGAGTAGCTCCTGATACTCGCAACACTCGTAAAACTAGGCCAACAGCTGTGGACTTGAACCAATATGCATATGTGCCAAAACAAAGATTAGAAGAATAG 2127 0.3987 MGIQGLLPLLKSIMVPIHIKDLHGCSVAIDTYSWLHKGALSCSTDLCKGIPTSRHIEYCMHRVNLLRHYGVKPILVFDGGLLPMKIEQENKRARSRKDNFERAVEHESNGNSSAAYECYQKAVDISPLIARELIQVLKQENVQYIVAPYEADAQMTFLAVSRQVDAVITEDSDLIPFGCPRIIFKMDKFGQGVQFQSSMLQKNKELNFEGFNRQMLLEMCILSGCDYLPSLPGMGLKKAHASIKRFKSYDKVLKHLKYSGVSVPPLYEESFRKAILTFQYQRVYDPVSESIVHLANIPEDIGDELDFLGPPLPKDIAQGIAEGDLDPITKIPFEGDKFVARLEIAGTSQFKTLNSERGKKRIDLPVQKNLLTKYFCFASLEAKREFKAPRTSPTIANQSTLISSSVNSLEHQTLEAAVGETMNSAAPTVDPESCSNDSPPNCYIENHFSTKNSELIESQYHAEKKGSPDHTILRQPRQPIHKPCLGLHKEHEFTNVQDKVEEKTKETKRKVIVRSPYFPQKQVEKSAPDEKQEQLVSGTVIDERKKAIYGGDLCNNQLKTNDLKRKVSPNDSIQSENLQARQMHPTSSTHENGCSDHNVEEEKFGTNISHIGHYSEIAEKSLDRFASVISAFKYTSGSRVSGLRAPLKDVRNTRNNRPAAVDFNQFAYVPKPTKTRRVAPDTRNTRKTRPTAVDLNQYAYVPKQRLEE 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00987 708 Pfam XPG I-region 141 226 IPR006086 GO:0004518
Tsu02g00987 708 Pfam XPG N-terminal domain 1 98 IPR006085 GO:0004518
Tsu02g00987 708 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 211 334 IPR036279 -
Tsu02g00987 708 SMART xpgineu 138 208 IPR006086 GO:0004518
Tsu02g00987 708 CDD PIN_EXO1 1 202 IPR044752 GO:0046872
Tsu02g00987 708 SMART HhH_4 213 246 IPR008918 GO:0003677|GO:0003824
Tsu02g00987 708 SMART xpgn3 1 99 IPR006085 GO:0004518
Tsu02g00987 708 ProSitePatterns XPG protein signature 1. 71 85 IPR019974 GO:0016788
Tsu02g00987 708 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 655 IPR006084 -
Tsu02g00987 708 Gene3D - 209 281 - -
Tsu02g00987 708 PANTHER EXONUCLEASE 1 1 655 IPR032641 GO:0006281|GO:0035312
Tsu02g00987 708 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 73 92 IPR006084 -
Tsu02g00987 708 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 137 154 IPR006084 -
Tsu02g00987 708 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 158 178 IPR006084 -
Tsu02g00987 708 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 216 231 IPR006084 -
Tsu02g00987 708 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 24 38 IPR006084 -
Tsu02g00987 708 SUPERFAMILY PIN domain-like 2 226 IPR029060 -
Tsu02g00987 708 Gene3D - 1 207 - -
Tsu02g00987 708 CDD H3TH_EXO1 214 285 IPR037315 GO:0003677|GO:0035312
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00987 Tsu-Chr2 8252202 8258015 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g00987 1 264 Core DNA Replication Machinery Family AT5G26680 25.271 1.06e-16 81.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00987 K10746 - gmx:100798062 852.818