Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tsu02g00986 | ATGCCTCGTAAAGTTAACTgtggaattgattatgatgacgACGACTACGAGGAATATGATGATGACTATGATTATGATGttgacactgataataattatTATGGAGCAGGAGAAGGGCCTGATACAAAGCAAGAGACCATCAGCCCTGGAATTTGGAAATGCTCCATTTGTACTTATGACAACGATGAGAGTATGACTTCGTGTGATATTTGTGGCGTTATGCGTCATCCCGTCGTTGACAATGGAACTTCCAACAGTAACAAAACAGATCCTTTCAAATTTGACGTTCCATCCCCAGATGATGTGGTTTTTACAGGCCTACATTCTTCAAAAAAGGGTTTGAAAGACAAAGTTAAAAACTCTAAAGATTCTCAGCTTTCATCAAGCAGCAGAGAGAAGAAAGAACTTGCTGTAGAATCCAATGTTGAAAGTCTAGATAACCTATCATCCTTAATGCAAAAGAACAAGCAGGATAGTGCAGCCAAGAACAAGCATTCCAAAAATGTAGAAATTAATCTCGAAACAATTGGTGAAACCTTAAACAGCTTATCATCATCTTTGCCAAAGGAAAAAGGAGATGATGCAAATAgaataatttcttcaaaaaatggtaCAAATGGTACCCgatcaaacaaagaaaaatctggTAGTTTGTCTGCATTGCCAAAAGTCGAAGAAAGTGATAAGCTTAGTTTGTCTTCTAACAAAGACGGAAAGTCCGAAAGGGCTTCCAGCAGTTTTAACCACATGGTTCTTGATGAAAGATCTGGAAATTCTGATAATACTAATGTTAAGGGACCTCATAAACAAGTTCCTTACCAGCCAGAAAAGTGGATGCTCCCGCAACAGTCTGAAGATACGTTGACTCAGTTGAATCTTGCAATTGTTGGTCATGTTGATTCTGGAAAATCAACACTATCTGGTAGGTTATTACACCTATTGGGACGAATTTCCAAGAAAGAAATGCACAAAAATGAAAAGGAGGCCAAGTTACAGGGCAAAGGATCCTTTGCTTATGCTTGGGCACTTGATGAAAGTTCTGAAGAAAGGGAAAGGGGAATAACCATGACAGTAGCTGTTGCATATTTTGACACTAAGAAATATCACGTTGTTGTGCTTGACTCTCCTGGTCATAAAGATTTTATCCCAAACATGATTTCTGGAGCTACACAAGCTGATGCCGCAATTCTTGTTATAGATGCCTCACTTGGTGCATTTGAAGCTGGTATGGATGGTGGCAAAGGACAAACAAGGGAGCATGCACAGCTTATAAGAAGTTTTGGTGTAGACCATGTTATAGTTGCAGTAAATAAGATGGATGCTGTAGCATTCTCAAAAGACCGTTTTGATTTTATAAGACATCAGCTGGGAACTTTTCTCCGCTCATGTGGTTTCAAAGATTCTTCTCTCTCATGGATTCCCTTGAGTGCCatggaaaatcaaaatttggtGGCATCCCCTTCTGACGCTGATTTCAAAAACTGGTATACTGGACCTTATCTGTTAGATGCAATTGACTCACTACAACCTCCTACTAGAGAATTCGCAAAACCTCTGTTAATGCCGATATGTGATATCATCAAATCAACTGCACAAGGACAGGTGTCTGCTTGTGGTAAACTGGAAGCAGGAGCTCTTCGAAGTGGAACAAAGGTATTAGTTATGCCTTCAGATGTTGTTGGAACAGTGCGCACATTGGAGCGCGACTCTAATGCCTGCTCTGTTGCAAGAGCTGGAGATAACGTAGCTGTAACGTTGCATGGTGTTGATGGAAGTCATGTATTTTCTGGAGGCGTATTATGTCATCCTGACTTTCCTGTTGCAATTGCAAAGCATTTGGAGTTGAAATTGCTTGTCTTGGATGGTGCAAGTCCCATATTGGTCGGCGCCCAGTTAGAGTTTCATATACATCATGCAAAGGAACCTGCTAGAGTTTCAAAAATATTGTCAGTACTTGATCCCAAGACCGGTAAGGTGACCAAAAAGTCTCCTCGCTGTCTCACGTCAAAACAAAGTGCAGTAATTGAGGTGATTTTGCATGAGCCAGTCTGTGTGGTAGAGTTTTCTAGATGTAAAGCTCTTGGAAGAGTATCCCTTAGATCATTAGGAAGAACAGTTGCAGTTGGACTTGTGACAAGAATAATCGAAGAACAAGATTAA | 2160 | 0.388 | MPRKVNCGIDYDDDDYEEYDDDYDYDVDTDNNYYGAGEGPDTKQETISPGIWKCSICTYDNDESMTSCDICGVMRHPVVDNGTSNSNKTDPFKFDVPSPDDVVFTGLHSSKKGLKDKVKNSKDSQLSSSSREKKELAVESNVESLDNLSSLMQKNKQDSAAKNKHSKNVEINLETIGETLNSLSSSLPKEKGDDANRIISSKNGTNGTRSNKEKSGSLSALPKVEESDKLSLSSNKDGKSERASSSFNHMVLDERSGNSDNTNVKGPHKQVPYQPEKWMLPQQSEDTLTQLNLAIVGHVDSGKSTLSGRLLHLLGRISKKEMHKNEKEAKLQGKGSFAYAWALDESSEERERGITMTVAVAYFDTKKYHVVVLDSPGHKDFIPNMISGATQADAAILVIDASLGAFEAGMDGGKGQTREHAQLIRSFGVDHVIVAVNKMDAVAFSKDRFDFIRHQLGTFLRSCGFKDSSLSWIPLSAMENQNLVASPSDADFKNWYTGPYLLDAIDSLQPPTREFAKPLLMPICDIIKSTAQGQVSACGKLEAGALRSGTKVLVMPSDVVGTVRTLERDSNACSVARAGDNVAVTLHGVDGSHVFSGGVLCHPDFPVAIAKHLELKLLVLDGASPILVGAQLEFHIHHAKEPARVSKILSVLDPKTGKVTKKSPRCLTSKQSAVIEVILHEPVCVVEFSRCKALGRVSLRSLGRTVAVGLVTRIIEEQD | 719 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tsu02g00986 | 719 | CDD | HBS1_C_III | 606 | 714 | - | - | |
Tsu02g00986 | 719 | PANTHER | OS04G0595300 PROTEIN | 118 | 717 | - | - | |
Tsu02g00986 | 719 | SUPERFAMILY | Translation proteins | 510 | 605 | IPR009000 | - | |
Tsu02g00986 | 719 | Gene3D | Translation factors | 609 | 719 | - | - | |
Tsu02g00986 | 719 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 290 | 533 | IPR027417 | - | |
Tsu02g00986 | 719 | ProSiteProfiles | Translational (tr)-type guanine nucleotide-binding (G) domain profile. | 288 | 519 | IPR000795 | GO:0003924|GO:0005525 | |
Tsu02g00986 | 719 | Gene3D | - | 44 | 86 | - | - | |
Tsu02g00986 | 719 | Pfam | Elongation factor Tu GTP binding domain | 291 | 507 | IPR000795 | GO:0003924|GO:0005525 | |
Tsu02g00986 | 719 | PRINTS | GTP-binding elongation factor signature | 432 | 441 | IPR000795 | GO:0003924|GO:0005525 | |
Tsu02g00986 | 719 | PRINTS | GTP-binding elongation factor signature | 371 | 381 | IPR000795 | GO:0003924|GO:0005525 | |
Tsu02g00986 | 719 | PRINTS | GTP-binding elongation factor signature | 387 | 398 | IPR000795 | GO:0003924|GO:0005525 | |
Tsu02g00986 | 719 | PRINTS | GTP-binding elongation factor signature | 292 | 305 | IPR000795 | GO:0003924|GO:0005525 | |
Tsu02g00986 | 719 | PRINTS | GTP-binding elongation factor signature | 351 | 359 | IPR000795 | GO:0003924|GO:0005525 | |
Tsu02g00986 | 719 | PANTHER | TRANSLATION FACTOR | 118 | 717 | - | - | |
Tsu02g00986 | 719 | MobiDBLite | consensus disorder prediction | 11 | 28 | - | - | |
Tsu02g00986 | 719 | ProSitePatterns | Zinc finger RanBP2-type signature. | 52 | 71 | IPR001876 | - | |
Tsu02g00986 | 719 | MobiDBLite | consensus disorder prediction | 114 | 141 | - | - | |
Tsu02g00986 | 719 | MobiDBLite | consensus disorder prediction | 237 | 268 | - | - | |
Tsu02g00986 | 719 | MobiDBLite | consensus disorder prediction | 198 | 217 | - | - | |
Tsu02g00986 | 719 | MobiDBLite | consensus disorder prediction | 148 | 167 | - | - | |
Tsu02g00986 | 719 | Gene3D | - | 279 | 512 | IPR027417 | - | |
Tsu02g00986 | 719 | Pfam | Elongation factor Tu C-terminal domain | 614 | 714 | IPR004160 | - | |
Tsu02g00986 | 719 | MobiDBLite | consensus disorder prediction | 1 | 45 | - | - | |
Tsu02g00986 | 719 | SUPERFAMILY | Ran binding protein zinc finger-like | 49 | 75 | IPR036443 | - | |
Tsu02g00986 | 719 | SMART | zf_4 | 50 | 74 | IPR001876 | - | |
Tsu02g00986 | 719 | SUPERFAMILY | EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain | 611 | 715 | IPR009001 | - | |
Tsu02g00986 | 719 | Gene3D | Translation factors | 516 | 605 | - | - | |
Tsu02g00986 | 719 | MobiDBLite | consensus disorder prediction | 114 | 140 | - | - | |
Tsu02g00986 | 719 | MobiDBLite | consensus disorder prediction | 183 | 270 | - | - | |
Tsu02g00986 | 719 | CDD | EF1_alpha | 292 | 511 | - | - | |
Tsu02g00986 | 719 | ProSiteProfiles | Zinc finger RanBP2 type profile. | 48 | 77 | IPR001876 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Tsu02g00986 | Tsu-Chr2 | 8242890 | 8249648 | Dispersed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Tsu02g00986 | 50 | 717 | Eukaryotic Initiation Factors Gene Family | AT5G10630 | 60.149 | 0.0 | 801 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tsu02g00986 | K14416 | - | gmx:100798594 | 1115.52 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Tsu08g03761 | 08 | 55864096 | 55866976 | Tsu02g00986 | 02 | 8242890 | 8249648 | PCT |