Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00986 ATGCCTCGTAAAGTTAACTgtggaattgattatgatgacgACGACTACGAGGAATATGATGATGACTATGATTATGATGttgacactgataataattatTATGGAGCAGGAGAAGGGCCTGATACAAAGCAAGAGACCATCAGCCCTGGAATTTGGAAATGCTCCATTTGTACTTATGACAACGATGAGAGTATGACTTCGTGTGATATTTGTGGCGTTATGCGTCATCCCGTCGTTGACAATGGAACTTCCAACAGTAACAAAACAGATCCTTTCAAATTTGACGTTCCATCCCCAGATGATGTGGTTTTTACAGGCCTACATTCTTCAAAAAAGGGTTTGAAAGACAAAGTTAAAAACTCTAAAGATTCTCAGCTTTCATCAAGCAGCAGAGAGAAGAAAGAACTTGCTGTAGAATCCAATGTTGAAAGTCTAGATAACCTATCATCCTTAATGCAAAAGAACAAGCAGGATAGTGCAGCCAAGAACAAGCATTCCAAAAATGTAGAAATTAATCTCGAAACAATTGGTGAAACCTTAAACAGCTTATCATCATCTTTGCCAAAGGAAAAAGGAGATGATGCAAATAgaataatttcttcaaaaaatggtaCAAATGGTACCCgatcaaacaaagaaaaatctggTAGTTTGTCTGCATTGCCAAAAGTCGAAGAAAGTGATAAGCTTAGTTTGTCTTCTAACAAAGACGGAAAGTCCGAAAGGGCTTCCAGCAGTTTTAACCACATGGTTCTTGATGAAAGATCTGGAAATTCTGATAATACTAATGTTAAGGGACCTCATAAACAAGTTCCTTACCAGCCAGAAAAGTGGATGCTCCCGCAACAGTCTGAAGATACGTTGACTCAGTTGAATCTTGCAATTGTTGGTCATGTTGATTCTGGAAAATCAACACTATCTGGTAGGTTATTACACCTATTGGGACGAATTTCCAAGAAAGAAATGCACAAAAATGAAAAGGAGGCCAAGTTACAGGGCAAAGGATCCTTTGCTTATGCTTGGGCACTTGATGAAAGTTCTGAAGAAAGGGAAAGGGGAATAACCATGACAGTAGCTGTTGCATATTTTGACACTAAGAAATATCACGTTGTTGTGCTTGACTCTCCTGGTCATAAAGATTTTATCCCAAACATGATTTCTGGAGCTACACAAGCTGATGCCGCAATTCTTGTTATAGATGCCTCACTTGGTGCATTTGAAGCTGGTATGGATGGTGGCAAAGGACAAACAAGGGAGCATGCACAGCTTATAAGAAGTTTTGGTGTAGACCATGTTATAGTTGCAGTAAATAAGATGGATGCTGTAGCATTCTCAAAAGACCGTTTTGATTTTATAAGACATCAGCTGGGAACTTTTCTCCGCTCATGTGGTTTCAAAGATTCTTCTCTCTCATGGATTCCCTTGAGTGCCatggaaaatcaaaatttggtGGCATCCCCTTCTGACGCTGATTTCAAAAACTGGTATACTGGACCTTATCTGTTAGATGCAATTGACTCACTACAACCTCCTACTAGAGAATTCGCAAAACCTCTGTTAATGCCGATATGTGATATCATCAAATCAACTGCACAAGGACAGGTGTCTGCTTGTGGTAAACTGGAAGCAGGAGCTCTTCGAAGTGGAACAAAGGTATTAGTTATGCCTTCAGATGTTGTTGGAACAGTGCGCACATTGGAGCGCGACTCTAATGCCTGCTCTGTTGCAAGAGCTGGAGATAACGTAGCTGTAACGTTGCATGGTGTTGATGGAAGTCATGTATTTTCTGGAGGCGTATTATGTCATCCTGACTTTCCTGTTGCAATTGCAAAGCATTTGGAGTTGAAATTGCTTGTCTTGGATGGTGCAAGTCCCATATTGGTCGGCGCCCAGTTAGAGTTTCATATACATCATGCAAAGGAACCTGCTAGAGTTTCAAAAATATTGTCAGTACTTGATCCCAAGACCGGTAAGGTGACCAAAAAGTCTCCTCGCTGTCTCACGTCAAAACAAAGTGCAGTAATTGAGGTGATTTTGCATGAGCCAGTCTGTGTGGTAGAGTTTTCTAGATGTAAAGCTCTTGGAAGAGTATCCCTTAGATCATTAGGAAGAACAGTTGCAGTTGGACTTGTGACAAGAATAATCGAAGAACAAGATTAA 2160 0.388 MPRKVNCGIDYDDDDYEEYDDDYDYDVDTDNNYYGAGEGPDTKQETISPGIWKCSICTYDNDESMTSCDICGVMRHPVVDNGTSNSNKTDPFKFDVPSPDDVVFTGLHSSKKGLKDKVKNSKDSQLSSSSREKKELAVESNVESLDNLSSLMQKNKQDSAAKNKHSKNVEINLETIGETLNSLSSSLPKEKGDDANRIISSKNGTNGTRSNKEKSGSLSALPKVEESDKLSLSSNKDGKSERASSSFNHMVLDERSGNSDNTNVKGPHKQVPYQPEKWMLPQQSEDTLTQLNLAIVGHVDSGKSTLSGRLLHLLGRISKKEMHKNEKEAKLQGKGSFAYAWALDESSEERERGITMTVAVAYFDTKKYHVVVLDSPGHKDFIPNMISGATQADAAILVIDASLGAFEAGMDGGKGQTREHAQLIRSFGVDHVIVAVNKMDAVAFSKDRFDFIRHQLGTFLRSCGFKDSSLSWIPLSAMENQNLVASPSDADFKNWYTGPYLLDAIDSLQPPTREFAKPLLMPICDIIKSTAQGQVSACGKLEAGALRSGTKVLVMPSDVVGTVRTLERDSNACSVARAGDNVAVTLHGVDGSHVFSGGVLCHPDFPVAIAKHLELKLLVLDGASPILVGAQLEFHIHHAKEPARVSKILSVLDPKTGKVTKKSPRCLTSKQSAVIEVILHEPVCVVEFSRCKALGRVSLRSLGRTVAVGLVTRIIEEQD 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00986 719 CDD HBS1_C_III 606 714 - -
Tsu02g00986 719 PANTHER OS04G0595300 PROTEIN 118 717 - -
Tsu02g00986 719 SUPERFAMILY Translation proteins 510 605 IPR009000 -
Tsu02g00986 719 Gene3D Translation factors 609 719 - -
Tsu02g00986 719 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 290 533 IPR027417 -
Tsu02g00986 719 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 288 519 IPR000795 GO:0003924|GO:0005525
Tsu02g00986 719 Gene3D - 44 86 - -
Tsu02g00986 719 Pfam Elongation factor Tu GTP binding domain 291 507 IPR000795 GO:0003924|GO:0005525
Tsu02g00986 719 PRINTS GTP-binding elongation factor signature 432 441 IPR000795 GO:0003924|GO:0005525
Tsu02g00986 719 PRINTS GTP-binding elongation factor signature 371 381 IPR000795 GO:0003924|GO:0005525
Tsu02g00986 719 PRINTS GTP-binding elongation factor signature 387 398 IPR000795 GO:0003924|GO:0005525
Tsu02g00986 719 PRINTS GTP-binding elongation factor signature 292 305 IPR000795 GO:0003924|GO:0005525
Tsu02g00986 719 PRINTS GTP-binding elongation factor signature 351 359 IPR000795 GO:0003924|GO:0005525
Tsu02g00986 719 PANTHER TRANSLATION FACTOR 118 717 - -
Tsu02g00986 719 MobiDBLite consensus disorder prediction 11 28 - -
Tsu02g00986 719 ProSitePatterns Zinc finger RanBP2-type signature. 52 71 IPR001876 -
Tsu02g00986 719 MobiDBLite consensus disorder prediction 114 141 - -
Tsu02g00986 719 MobiDBLite consensus disorder prediction 237 268 - -
Tsu02g00986 719 MobiDBLite consensus disorder prediction 198 217 - -
Tsu02g00986 719 MobiDBLite consensus disorder prediction 148 167 - -
Tsu02g00986 719 Gene3D - 279 512 IPR027417 -
Tsu02g00986 719 Pfam Elongation factor Tu C-terminal domain 614 714 IPR004160 -
Tsu02g00986 719 MobiDBLite consensus disorder prediction 1 45 - -
Tsu02g00986 719 SUPERFAMILY Ran binding protein zinc finger-like 49 75 IPR036443 -
Tsu02g00986 719 SMART zf_4 50 74 IPR001876 -
Tsu02g00986 719 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 611 715 IPR009001 -
Tsu02g00986 719 Gene3D Translation factors 516 605 - -
Tsu02g00986 719 MobiDBLite consensus disorder prediction 114 140 - -
Tsu02g00986 719 MobiDBLite consensus disorder prediction 183 270 - -
Tsu02g00986 719 CDD EF1_alpha 292 511 - -
Tsu02g00986 719 ProSiteProfiles Zinc finger RanBP2 type profile. 48 77 IPR001876 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00986 Tsu-Chr2 8242890 8249648 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g00986 50 717 Eukaryotic Initiation Factors Gene Family AT5G10630 60.149 0.0 801
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00986 K14416 - gmx:100798594 1115.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g03761 08 55864096 55866976 Tsu02g00986 02 8242890 8249648 PCT