Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00964 ATGAATAATAGACGGTTGGAATTCGGGAGGCCTGTCTCAGGTAAAAGAAGGTTGAAGGATTTAATGCTTCAAAAAGATAATCGCTTCTGTGCTGATTGTGGTTCTCCAGATCCTAAATGGGCGTCAGCCAATATTGGAGTTTTTTTGTGCTTAAAATGTTGCGGTGTGCACAGAAGTCTCGGTACTCATATATCAAAGATTTTGTCGGTAACATTGGATGAATGGTCAAATGATGAAATAGATGCAATGATAGAAGTTGGAGGAAATGCTTCTGCTAATTCAATTTATGAGGCTTATATTCCAGAAGGAGTTACAAAACCTGGACCAGATGCAAGTCACGAGCAACGCGAAAAATTCATCAGGTCAAAGTATGAGCGTCAAGAATTTTTGAAACATAGTTTGCGCATTGTATCAACAAAAAGCAGCGATCGTCGAGAAAGTTTCTCCAAAAGGCTTATGGATAGCTTTCGATCTAGTAGTGGTTCAAAAAAAATGGAAGGAATGGTGGAATTTATTGGAATGTTGAAAGTGAAAGTAGTCCAAGGCACGAATTTAGCGATCAGAGATATGATGACAAGCGATCCGTATGTTGTTTTGAAGCTTGGCCAACAGACTGTTCAGACAACTGTAATAAAGAGTAATTTGAATCCAATTTGGAATGAAGAACTTATGTTGTCAGTTCCTCAGGATTATGGACAAATGAGTTTGAAGGTATTTGATCAAGACTTGTTTTCGGCTGATGATATAATGGGAGAAGCAGATATTGATCTTCAACCTTTGATAACATCTGCAATGGCATTTGGTGATGCTGGAATGTTTGATGATATGAAAATAGGAAAATGGTTGAAATCCAATGACAATGCACTTATAGAAGATAGCATAGTCAATATCATTGATGGTAAGGTTAAACAAGAGATTGCAATCAAGCTCCAAAATGTCGAATGTGGAGAAATATACTTAGAACTTGAATGGATGTCTCTTAATCAATAG 990 0.3717 MNNRRLEFGRPVSGKRRLKDLMLQKDNRFCADCGSPDPKWASANIGVFLCLKCCGVHRSLGTHISKILSVTLDEWSNDEIDAMIEVGGNASANSIYEAYIPEGVTKPGPDASHEQREKFIRSKYERQEFLKHSLRIVSTKSSDRRESFSKRLMDSFRSSSGSKKMEGMVEFIGMLKVKVVQGTNLAIRDMMTSDPYVVLKLGQQTVQTTVIKSNLNPIWNEELMLSVPQDYGQMSLKVFDQDLFSADDIMGEADIDLQPLITSAMAFGDAGMFDDMKIGKWLKSNDNALIEDSIVNIIDGKVKQEIAIKLQNVECGEIYLELEWMSLNQ 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00964 329 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 8 329 IPR044518 GO:0005096|GO:0005543
Tsu02g00964 329 SMART arf_gap_3 15 137 IPR001164 GO:0005096
Tsu02g00964 329 ProSiteProfiles ARF GTPase-activating proteins domain profile. 15 144 IPR001164 GO:0005096
Tsu02g00964 329 SUPERFAMILY ArfGap/RecO-like zinc finger 15 131 IPR037278 -
Tsu02g00964 329 Gene3D Arf GTPase activating protein 9 136 IPR038508 -
Tsu02g00964 329 Pfam Putative GTPase activating protein for Arf 16 131 IPR001164 GO:0005096
Tsu02g00964 329 PRINTS HIV Rev interacting protein signature 46 63 IPR001164 GO:0005096
Tsu02g00964 329 PRINTS HIV Rev interacting protein signature 27 46 IPR001164 GO:0005096
Tsu02g00964 329 PRINTS HIV Rev interacting protein signature 67 88 IPR001164 GO:0005096
Tsu02g00964 329 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 171 326 IPR035892 -
Tsu02g00964 329 SMART C2_3c 174 269 IPR000008 -
Tsu02g00964 329 CDD ArfGap 18 124 - -
Tsu02g00964 329 CDD C2_ArfGAP 172 316 - -
Tsu02g00964 329 Gene3D C2 domain 171 329 IPR035892 -
Tsu02g00964 329 ProSiteProfiles C2 domain profile. 155 270 IPR000008 -
Tsu02g00964 329 Pfam C2 domain 174 263 IPR000008 -
Tsu02g00964 329 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD10 8 329 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00964 Tsu-Chr2 8075240 8077898 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g00964 8 329 C2H2 Transcription Factor Family AT4G21160 72.424 0.0 516
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00964 K12486 - gmx:100777084 536.569
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g00964 02 8075240 8077898 Tsu02g00964 02 8075240 8077898 ECH