Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00947 ATGATTAGAAACTTATTAGTTTTGCTTTCAACAATTTTTGTAGTGGTCAATGCATTCAACAACCACAATGAGAATCATGGTGGTTACCCAACATGGTTTTCTGAATCTAATTATATGTTATTGTCTAAGTTGAACAATGTTGTTCAGCCCAATGTAACGGTGGCTAAAGATGGTAGTGTCCAATTTAAGACTATTACCGAAGCTATTAACTCATACCCGATTAAACATCGAGGTCGAGGTAAATTCGTCATTTATATTAAAGCCGGTATATACAATGAGTATATTATCATTGCTAAAAACAAGAATAACATTCTCTTATATGGGGATGGCCCTACAAAGACCATTATCACCGGAAGCAAGAGTCGCACCAAAGGAGCGAGCAAAACAATGGACACCGCTACCTTCTCCACCCTAGCCAAAGATTTCACTGGCAAGTCAATTACATTTGAAAACACAGCTGGTCATGAAGCTGGACCGGCAGTGGCACTTTACGTGAAAGGTGATCGTTCAGTATTTTTCGATTGTGGAATTTATGGTTACCAAGACACGTTGTATGTACACAAATTCCGTCAATTCTATCGCAATTGCGAGATCTCTGGAACTATTGATTTTATCTTTGGACATTCAACTACCTTGATCCAAAATTCTAAAATCATTGTGAGAAAGCCAGGTTCAAACCATCGCAACATTGTGGTGGCAAATGGAACAAATGAAACGAATGCGGTCACTggaatagtctttcaaaattgCTCAATCATGCCAGATAATGAGCTTTACCCTAATAGGTTGACAGTGAAGACTTATTTGGCAAGACCATGGAAGCCATTTTCAAGGGCAGTGTTTATCAACAATTTTATGGGTGATTTGATTCAACCAGATGGATATTCGATTTGGGGTCCTAATGAAACACACATTGCAAACTGCTACTTTGCAGAATTTGGTAGCACTGGACCAGGGGCCAATTCTCAATCAAGAGTTAAATGGAGTAAAGATCTTATTAGTAAGGATGAAGCTACTAAATTTACAGTTCAACCATGGCTTCAAGCTAACACTTGGTTGCCTGCCACTGGCATTCCTTTCAGTCCTGGTCTTGAAGCTTAA 1101 0.3833 MIRNLLVLLSTIFVVVNAFNNHNENHGGYPTWFSESNYMLLSKLNNVVQPNVTVAKDGSVQFKTITEAINSYPIKHRGRGKFVIYIKAGIYNEYIIIAKNKNNILLYGDGPTKTIITGSKSRTKGASKTMDTATFSTLAKDFTGKSITFENTAGHEAGPAVALYVKGDRSVFFDCGIYGYQDTLYVHKFRQFYRNCEISGTIDFIFGHSTTLIQNSKIIVRKPGSNHRNIVVANGTNETNAVTGIVFQNCSIMPDNELYPNRLTVKTYLARPWKPFSRAVFINNFMGDLIQPDGYSIWGPNETHIANCYFAEFGSTGPGANSQSRVKWSKDLISKDEATKFTVQPWLQANTWLPATGIPFSPGLEA 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00947 366 PANTHER PECTINESTERASE 21 364 - -
Tsu02g00947 366 Pfam Pectinesterase 51 349 IPR000070 GO:0030599|GO:0042545
Tsu02g00947 366 PANTHER PECTINESTERASE 21 364 - -
Tsu02g00947 366 SUPERFAMILY Pectin lyase-like 48 363 IPR011050 -
Tsu02g00947 366 ProSitePatterns Pectinesterase signature 1. 78 97 IPR018040 -
Tsu02g00947 366 ProSitePatterns Pectinesterase signature 2. 198 207 IPR033131 -
Tsu02g00947 366 Gene3D - 45 364 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00947 Tsu-Chr2 7893878 7897602 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g00947 25 364 Carbohydrate Esterase AT2G47030 44.633 9.75e-96 295
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00947 K01051 - gmx:100808559 437.573