Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00941 ATGGATCCATATGACCTTCCACAAAAGTCTCCACACAAGGACAATGAATCTGTTAACAAAGAAATAGTTTTCTTACATGGTGACTTAGATCTATTTATCATAGAAGCTAAATCTCTTCCAAATCTTGATTTATCAACTGAAGCAGTTAGAAAATGTATTACTATGGGAAACAGTTGCACACCGCCTTTTGTAAAAGGACTCAAAACACACTCAGGTAAAGACAATATCATAACAAGTGATCCTTATGTATCTGTTTGTCTATGTGGTGCAACCATAGCACAAACTCGAGTAATTCCAAATTGCGAAAACCCTTTATGGGATGAACATTTTGTTCTTCCTGTTGCTCATCCTGTTCAAAAAGTTGAGTTTCTAGTAAAAGATAATGATATTCTTGGTGCAGAACTCATTGGTGTCGTGGATATACCTGTTCAAAAGTTACTATCTGGTGAAATTGTTAATGATTGGTTTCCGGTTATAGGTCAATATGGAAATTGTTTAAAGCCTTATCCTGAGTTGCATATTTCTATTCAATTTAAGGCGATTGATACCATTAAAGAGGAATCCGGAAGTGTTAATTTAGGTGTTCCTGGTACATATTTTCCGCTTAGGATAGGAGGGAATGTTACTCTTTATCAAGATGCACATATACCGGATGGTATGTTACCTGATATTGAACTTGATGATGGAAAAATGTATCAACATAGTAAATGTTGGGAGGATATTTGTCACGCGATTTTGGAAGCTCATCATTTGATATATATTATCGGATGGTCGGTTTTTCACCCTGTGAAGCTTGTTAGAGAACCGACAAAACCATTGCCTTCTGGTGGAGAGCTTACACTTGGAGAGCTTTTGAAATACAAGTCACAAGAAGGGTTAAGAGTTGTTATGCTTATTTGGGATGATAGAACTTCGCACGacaaatttcttttgaaaacaGATGGTGTGATGCAGACTCATGATGAAGAAactaaaaagttttttaaacatTCCACTGTTCATTGTGTGTTATCTCCGCGCTACGCAAGCAATAAACTCAGTATTTTCAAGCAACAGGCATGTAGTTTCTCAGTGGTGGGAACACTCTTTACGCATCACCAAAAATGTGTGCTTCTAGACACTCAAGGTTCTGGGAATACTCGAAAAATAACCGCTTTTATCGGTGGTCTTGATCTGTGTGATGGAAGATATGATACTCCTGAGCATAGACTTTTTCGTGATATTGATTCGGTCTTTCATAATGATTTTCATAATCCTACATTTCAATTAAGTTCTAATTCTTTTGCACCAAGACAACCATGGCATGACTTACATTGCAAAATTGAAGGTCCAGCTGCATATGATATATTAACCAATTTTGAACAAAGATCACGGAAAGCTAAAAAATGGCGCGATTTCAGGCTTAGGAAGGTGACAAATTGGCATGATGATGCTTTACTAAGGCTAGATCGTATTTCATGGATTGTCAAACCATCTTCTGGTCCTGAAGGCGATAAATCTGTTCGTGTAACCGAAGACACTGATCCTGAGAGTTGGCATGTACAGATATTTCGGTCCATAGATTCAGGATCTGTAAAGGGATTTCCTAAGGATTTTGACAAAGCAAAAGCTCAGAATCTTTTatgtggaaaaaatttaaaagttgatCAAAGCATCCATGCTGCTTATGTAAAAGCAATAAGATCCGCGGAGCGCTTCATTTATATTGAGAATCAGTATTTTCTTGGCTCCTCATATCATTGGCCTTCATATAAGAATGCAGGTGCAAATCACTTGATTCCGATGGAGTTGGCTTTAAAAATTGCGAACAAGATAAGCAAGAATGAACGCTTTTGTGTGTATATAGTTATACCAATGTGGCCAGAAGGAGTTCCAACTAGTGCTGCTGTTCAAGAAATCTTGTTCTGGCAAGGACAAACAATGTCTATGATGTACAAGATTATTGCAGATGCACTTGAAAAAGCAGGTCTCTCTGAATGTTATCATCCACAAGATTATCTCAATTTTTACTGCCTTGGCAAAAGAGAACCTCAATTGAACGAAAGTCAGTCACCAATTAATCAATCATCTGAAAACCGCGCCTTGGCATCAGTTAAAAAATACCGGCGTTTTATGATTTATGTTCATGCAAAAGGAATGGTAGTTGATGATGGATATGTAATCATTGGATCAGCAAATATTAATCAGAGATCATTAGATGGATCAAGAGACACAGAAATAGCCATGGGAGCTTATCAACCAAAACATACATTGCAACATAAGAACACTCTTCCACGTGGCCAGGTATATGGATACCGAATGTCGCTTTGGGCCGAGCACCTTGGTGGTATTGATGACACTATTACTAAACCTGACACACTGGAATGTGTAAGACATGTTAATAGAATGGCTAGGAAAAATTGGAGCATATATGTATCTGAGGAAGGGCAAGAAATGATGGGAACCTTGATGCTATATCCAGTTCATATTAGCAGAAATGGAAAAGTTAGTTCACTACAAGGTCATGAGTCTTTTCCTGATGTTGGTGGCAAAATTCTTGGAGCACATAACTCACTTCCAGATGCACTAACCACATAA 2577 0.371 MDPYDLPQKSPHKDNESVNKEIVFLHGDLDLFIIEAKSLPNLDLSTEAVRKCITMGNSCTPPFVKGLKTHSGKDNIITSDPYVSVCLCGATIAQTRVIPNCENPLWDEHFVLPVAHPVQKVEFLVKDNDILGAELIGVVDIPVQKLLSGEIVNDWFPVIGQYGNCLKPYPELHISIQFKAIDTIKEESGSVNLGVPGTYFPLRIGGNVTLYQDAHIPDGMLPDIELDDGKMYQHSKCWEDICHAILEAHHLIYIIGWSVFHPVKLVREPTKPLPSGGELTLGELLKYKSQEGLRVVMLIWDDRTSHDKFLLKTDGVMQTHDEETKKFFKHSTVHCVLSPRYASNKLSIFKQQACSFSVVGTLFTHHQKCVLLDTQGSGNTRKITAFIGGLDLCDGRYDTPEHRLFRDIDSVFHNDFHNPTFQLSSNSFAPRQPWHDLHCKIEGPAAYDILTNFEQRSRKAKKWRDFRLRKVTNWHDDALLRLDRISWIVKPSSGPEGDKSVRVTEDTDPESWHVQIFRSIDSGSVKGFPKDFDKAKAQNLLCGKNLKVDQSIHAAYVKAIRSAERFIYIENQYFLGSSYHWPSYKNAGANHLIPMELALKIANKISKNERFCVYIVIPMWPEGVPTSAAVQEILFWQGQTMSMMYKIIADALEKAGLSECYHPQDYLNFYCLGKREPQLNESQSPINQSSENRALASVKKYRRFMIYVHAKGMVVDDGYVIIGSANINQRSLDGSRDTEIAMGAYQPKHTLQHKNTLPRGQVYGYRMSLWAEHLGGIDDTITKPDTLECVRHVNRMARKNWSIYVSEEGQEMMGTLMLYPVHISRNGKVSSLQGHESFPDVGGKILGAHNSLPDALTT 858
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00941 858 Gene3D Endonuclease Chain A 514 759 - -
Tsu02g00941 858 Pfam Phospholipase D C terminal 778 848 IPR024632 -
Tsu02g00941 858 Gene3D Endonuclease Chain A 226 478 - -
Tsu02g00941 858 SMART pld_4 361 396 IPR001736 GO:0003824
Tsu02g00941 858 SMART pld_4 704 731 IPR001736 GO:0003824
Tsu02g00941 858 SUPERFAMILY Phospholipase D/nuclease 234 465 - -
Tsu02g00941 858 Pfam Phospholipase D Active site motif 362 396 IPR001736 GO:0003824
Tsu02g00941 858 CDD C2_plant_PLD 23 178 - -
Tsu02g00941 858 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 361 396 IPR001736 GO:0003824
Tsu02g00941 858 ProSiteProfiles C2 domain profile. 10 156 IPR000008 -
Tsu02g00941 858 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 704 731 IPR001736 GO:0003824
Tsu02g00941 858 PIRSF PLD_plant 13 858 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Tsu02g00941 858 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 25 179 IPR035892 -
Tsu02g00941 858 SUPERFAMILY Phospholipase D/nuclease 550 787 - -
Tsu02g00941 858 Pfam C2 domain 27 158 IPR000008 -
Tsu02g00941 858 Pfam PLD-like domain 694 742 IPR025202 -
Tsu02g00941 858 Gene3D C2 domain 11 181 IPR035892 -
Tsu02g00941 858 SMART C2_3c 28 155 IPR000008 -
Tsu02g00941 858 PANTHER PHOSPHOLIPASE D 20 858 IPR015679 -
Tsu02g00941 858 PANTHER PHOSPHOLIPASE D 20 858 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00941 Tsu-Chr2 7845730 7849228 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g00941 21 857 Phospholipase D Gene Family (Wang group) AT2G42010 52.995 0.0 910
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00941 K01115 - gmx:100810824 1461.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g00941 02 7845730 7849228 Tsu02g00941 02 7845730 7849228 ECH