Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00924 ATGGGGAAAAGATCAGGTCCATGCTTGCATTGTGGAATAACATCTGATCAACATTGGCGTCGGGGACCAAATGACAAGCCAGTGTTATGCAATTCATGTggaataagatataaaatttgtgGAAATCTTGAAAACTATAGCCCAAGGCATTGTCCACAAAGCCACAACAATAATCAACAAGTTgagaaagatgaagaagatCTCCCAAACAACGATCTAGATTCAGAATCAGATAATGAGATCGAGAACATGACACCAATTGAAAAGTTTCAAAAACAACTTTTTGACGAGTGGACACGTCTCGGAAGACCAAGCTCATCATCCCCAAAagatgttttgatttttcaaaatgttAACAACTTCATACCTTCAAATGAAGTTGGTCTTGGAGCTGTTCTTCTTAAGCCAGACGggGTTTCAGATAGGCCACAAAATAATGTAGATTTGAACCAACCACAGAAGACACTCAAAAGAACAAGGTCTAAAAGGATGACAACTGCAAAGCTTCTTGGGAACTga 519 0.3526 MGKRSGPCLHCGITSDQHWRRGPNDKPVLCNSCGIRYKICGNLENYSPRHCPQSHNNNQQVEKDEEDLPNNDLDSESDNEIENMTPIEKFQKQLFDEWTRLGRPSSSSPKDVLIFQNVNNFIPSNEVGLGAVLLKPDGVSDRPQNNVDLNQPQKTLKRTRSKRMTTAKLLGN 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00924 172 PANTHER GATA ZINC FINGER PROTEIN 13 140 - -
Tsu02g00924 172 CDD ZnF_GATA 7 60 IPR000679 GO:0006355|GO:0043565
Tsu02g00924 172 Pfam GATA zinc finger 8 38 IPR000679 GO:0006355|GO:0043565
Tsu02g00924 172 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 5 56 - -
Tsu02g00924 172 MobiDBLite consensus disorder prediction 67 81 - -
Tsu02g00924 172 PANTHER OSJNBB0038F03.10 PROTEIN 13 140 IPR044589 -
Tsu02g00924 172 MobiDBLite consensus disorder prediction 51 83 - -
Tsu02g00924 172 ProSiteProfiles GATA-type zinc finger domain profile. 8 41 IPR000679 GO:0006355|GO:0043565
Tsu02g00924 172 SMART GATA_3 2 60 IPR000679 GO:0006355|GO:0043565
Tsu02g00924 172 Gene3D - 1 71 IPR013088 GO:0006355|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00924 Tsu-Chr2 7700770 7703860 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g00924 1 51 C2C2-Gata Transcription Factor Family AT5G47140 58.824 7.11e-16 72.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Tsu02g00924 GATA 2.5e-09 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00924 - - cam:101493109 164.851