Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00923 ATGGGGAGAACCGGTCCATGCTACCATTGCGGAATAAATTtGACTAACATAGTTTCATCACCAGCAACTCCACTTTGGCGCCAGGGACCAAATGACAAACCAGTGTTGTGCAATGCTTGCGGATCAAGATACCGACATTGGGGACACCTTGACAATTATTTTCCAAGGCACTCTCTTCCGGAATCAGAAGAACTCGTTGACAATTCTCCAATCAATGTTCCTGATTCAGAAAATGGTGAAAAAGCTTCAGATTTGTTGAAATCTGAAATCCCTTCAAAGAAACGTAGTTTAAGGGTTGTTCGTAAGATGACACCGATGCAAAAGTTTCATGCACTACTTCTCAATGAGCTGAAACATCGAGAGATCAAAGATGAATCATCTCCAGAAGAGGTTTTGTTGTTCGATAATGTGAACAACTTCATACCTCCCAATGAAATCGGACTTGGAGCTGTTCTCCTTAAACCAGATGGTACTTCTATATAG 483 0.4141 MGRTGPCYHCGINLTNIVSSPATPLWRQGPNDKPVLCNACGSRYRHWGHLDNYFPRHSLPESEELVDNSPINVPDSENGEKASDLLKSEIPSKKRSLRVVRKMTPMQKFHALLLNELKHREIKDESSPEEVLLFDNVNNFIPPNEIGLGAVLLKPDGTSI 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00923 160 PANTHER GATA ZINC FINGER PROTEIN 22 159 - -
Tsu02g00923 160 CDD ZnF_GATA 6 49 IPR000679 GO:0006355|GO:0043565
Tsu02g00923 160 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 6 53 - -
Tsu02g00923 160 SMART GATA_3 1 78 IPR000679 GO:0006355|GO:0043565
Tsu02g00923 160 Gene3D - 4 104 IPR013088 GO:0006355|GO:0008270
Tsu02g00923 160 PANTHER OSJNBB0038F03.10 PROTEIN 22 159 IPR044589 -
Tsu02g00923 160 Pfam GATA zinc finger 22 49 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00923 Tsu-Chr2 7691480 7695264 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g00923 1 64 C2C2-Gata Transcription Factor Family AT5G47140 56.250 1.30e-19 82.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Tsu02g00923 GATA 2.5e-09 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00923 - - mtr:MTR_8g089130 162.925