Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00918 ATGAGTTTTGGGAATTTTCAAAATCTGCTCCACATGGACTTGTCTGGCAACAAACTCAATGGAAACATACCTGCGGAAATCCTCAATCTCCCAACTTTGAGCATTGTTTTAAACTTATCTATGAACTTGTTGAGTGGACCGATACCTCATGTTGGGAAATTGACTACCATTGCCTCTATTGACTTTTCCAACAACCAATTGAATGGCAGCATTCCAAGCTCATTCAGCAGTTGTTTGAGCTTGGAGAAATTGTTTTTGGCTCGAAATATGCTTTCAGGTTCCATTCCAAAATCTCTTGGAGATGTGAGAGCCTTGGAAACTTTGGACTTGTCCTCCAACCTACTCACAGGATGCATTCCTGTTGAACTTCAAAATCTGCATGCCCTTCACCTTTTAAACCTCTCTTATAATGATTTAGAAGGAGCCATTCCTAGTGGTGGAGTTTTCAAAAATCTCTCTGACGTGAATGTAACAGCAATAGCAACAGCCGCATCTGAACAGCTAAAGCCACATGCTAGGATGGTCTCTTATGATGAGCTTCGCTTGGCAACTGAGGAGTTCATCCAAGAAAATTTAATAGGAATTGGGAGTTTTGGATCAGTGTATAAAGGACATCTAAGTCAGGGAAACACTGTCGCAGTGAAAGTGCTTGACACTCTAAGAACAGGTTCTTTAAAGAGTTTCTTTGCAGAGTGTGAGACTATGAAGAACTCACGGCACATTAATCTGGTTAAGCTAATCACATCATGCTCTAGTGTTGACTTTAGAAACAATAATTTTCTGGCTTTGGTGTATGAGTATTTAAGTAATGGGAGCTTGGATGATTGGATTAAGGGGAGGAGAAGTCATGCAAATGGAAATGGTTTGAACCTTATGGAGAGAGTGAATATAGCTATAGATGTTGCTTGTGCATTAGATTACCTGCACAATGATAGTGAAACTCCTATTGTACATTGTGATCTAAAACCAAGCAATATTCTCCTAGATGAAGATATGACTGCAAAGGTTGGCGACTTTGGTTTGGCTAGGTTGCTGATACGAAGATCAACTGATCAAGTTTCCATCAGCTCCACTCATGTTCTTAGGGGTTCAATTGGTTACATACCTCCAGAGTATGGATGGGGAGAGAAACCATCTGCAGCAGGTGATGTATATAGTTTTGGGATAGTGTTACTAGAGCTCTTCTCTGGAAAAAGTCCACAAGATGATTGCTTCACAGGAGGCCTGAGCATAACAAAATGGGTGCAATCAGCACTCAAAAACAAGATTGTTCAAGTCATTGACCCTCATTTGCTATCACTCATTTTTCATGATGATCCTGCTAGAGAAGACTCCAATCTACAGCTCCATTGTGTGGATGCAATTATGGGAGTTGGCATGTCCTGCGCTGCAGACAATCCAGATGAACGCATTGGCATTAGAGTTGCTCTTCACCAACTAAAAGCTGCTAGGGACGACTCTCTTACGAAAAAATTCTGA 1479 0.4097 MSFGNFQNLLHMDLSGNKLNGNIPAEILNLPTLSIVLNLSMNLLSGPIPHVGKLTTIASIDFSNNQLNGSIPSSFSSCLSLEKLFLARNMLSGSIPKSLGDVRALETLDLSSNLLTGCIPVELQNLHALHLLNLSYNDLEGAIPSGGVFKNLSDVNVTAIATAASEQLKPHARMVSYDELRLATEEFIQENLIGIGSFGSVYKGHLSQGNTVAVKVLDTLRTGSLKSFFAECETMKNSRHINLVKLITSCSSVDFRNNNFLALVYEYLSNGSLDDWIKGRRSHANGNGLNLMERVNIAIDVACALDYLHNDSETPIVHCDLKPSNILLDEDMTAKVGDFGLARLLIRRSTDQVSISSTHVLRGSIGYIPPEYGWGEKPSAAGDVYSFGIVLLELFSGKSPQDDCFTGGLSITKWVQSALKNKIVQVIDPHLLSLIFHDDPAREDSNLQLHCVDAIMGVGMSCAADNPDERIGIRVALHQLKAARDDSLTKKF 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00918 492 PANTHER PROTEIN KINASE, PLANT-TYPE, PUTATIVE-RELATED 161 486 - -
Tsu02g00918 492 PANTHER PROTEIN KINASE, PLANT-TYPE, PUTATIVE-RELATED 1 157 - -
Tsu02g00918 492 SUPERFAMILY L domain-like 5 156 - -
Tsu02g00918 492 ProSitePatterns Serine/Threonine protein kinases active-site signature. 316 328 IPR008271 GO:0004672|GO:0006468
Tsu02g00918 492 PANTHER OS04G0122200 PROTEIN 161 486 - -
Tsu02g00918 492 Pfam Leucine rich repeat 80 139 IPR001611 GO:0005515
Tsu02g00918 492 Gene3D Phosphorylase Kinase; domain 1 161 267 - -
Tsu02g00918 492 PANTHER OS04G0122200 PROTEIN 1 157 - -
Tsu02g00918 492 ProSiteProfiles Protein kinase domain profile. 187 481 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu02g00918 492 SMART serkin_6 187 488 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu02g00918 492 Gene3D Transferase(Phosphotransferase) domain 1 268 491 - -
Tsu02g00918 492 Gene3D Ribonuclease Inhibitor 1 160 IPR032675 -
Tsu02g00918 492 Pfam Protein kinase domain 189 402 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu02g00918 492 SUPERFAMILY Protein kinase-like (PK-like) 169 480 IPR011009 -
Tsu02g00918 492 CDD STKc_IRAK 193 470 - -
Tsu02g00918 492 ProSitePatterns Protein kinases ATP-binding region signature. 193 215 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00918 Tsu-Chr2 7665126 7667168 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g00918 2 485 Receptor kinase-like Gene Family AT3G47580 38.078 2.89e-111 351
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Tsu02g00918 Pkinase 1.6e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00918 - - gmx:102664710 763.066