Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00908 ATGGTAGATTTGATGTTTATTTCATGTCTATTGTTTATTATAATtcagttaattaatttttctttcttatgcATGCATGATATTTTGCAGGATAATCCTTTTAGGCACGAACCAAAAATGGAAAATACATTTGAATCTTTCAGCAGTCCACAACATAAAAAGATATCATCCAGATGGGATCCATTCGAAGCATGCAGGCCTATAATCGGCGAAGCACCTGTCTTTTATCCTACTTATGAGGAGTTTAAAGACACACTTGGTTACATAGCTAAGATACGTCCTCTAGCCGAACCCTATGGCATATGTAAAGTTGTCCCTCCAGCTTGCTGGGTTCCACCTTGTCCGCTTAAGCAGAAAGAGATATGGGAAAATGCTAAATTTCCAACCCGAATTCAGCAAGTTGACTTGCTTCAGAACCGCGAGCCAATGAGGAAGAAAACTAGGGGAAGGAAACGAAAGCGTGGAAAGCAGTCAAAGATGGGAACATGTAGTAGGAGAATGGGAAATTCATGTTCTGAAGCTGATGCTACTTCTGAATCTGATGATAAGTTTGGATTCCAATCAGGACCAGACTTCACACTTAAAGAATTTCAGCAATATGATAATACTTTTAAAGATTGCTACTTCGAATCAAATGATTGCAAAGATGGgaaagttagtaataataatcaCCTTGAGAAACGGAAGCCGTCTGTGGAGGAAATGGAAGGCGAATACTGGCGGATAATAGAGCAACCGACCGATGAGGTCGAGGTGTATTACGGAGCCGACCTAGAAACTGGAGCATTTGGAAGCGGTTTTCCTAAGACGTCATCCTTAACTAAGAGTGATTCAGATTTGTATGCTAAGTCTGGCTGGAATCTGAATAACTTTGCGCGGCTGCCAGGTTCTGCACTGTGTTTCGAAGGAAGCGACATTTCAGGAGTTTTGGTTCCATGGCTGTATGTTGGAATGTGCTTTTCCTCATTTTGCTGGCATGTTGAAGATCATCACCTTTATTCACTTAATTATCTGCACTGGGGTGACCCAAAAGTATGGTATGGTGTACCTGGGAGCCATGCTTCAGCTATGGAAGATGCAATGAGGAAACACATGCCTGATTTGTTTGAAGAAAACCCAAATCTACTCAATGAGTTGGTGACTCAGTTCTCTCCTTCGATACTTAAGTCAGAAGGGGTTCCTGTGTATCGCACTGTCCAGCGTTCTGGGGAATTTGTTATCACCTTTCCAAGGGCATACCACTGTGGATTCAGCTGCGGCTTCAACTGTGCAGAGGCCGTGAATGCGGCTCCATATGATTGGTTTGTGCATGGCCAGAATGCTGTTGAGATTTACAGTCTGCAATGCCGTAAGACATCATTGTCCCATGATAAGTTGTTATTTGGATCTGCTAAGGAAGCTGTACAAGCCCTTGCTGAGACAACTCTTCATGGAAAAGGAAgtctaaaatatttaaattggaGAAATGCTTGTGGTAAAGATGGAGTTCTTACCAATGCAGTTAAGACAAGGATAGTGATGGAAAAAGAGAGGCTTGACCAGCTTCCAAATCAGTTAAAGATGCTAAAGATGGACACAGACTTCGATTCGGTTGAGGAAAGGGAATGCTTCTCTTGTTTCTATGACTTGCACCTATCCGCTGTTGGTTGCGAGTGCTCTCCTGACAGCTATTCTTGTCTTAGACACTTCAAGTTGTTTTGCTCATGCGAAATGGATAGAAGATTTGTTCTGGTTCGTTATACTATGAATGAGCTAAGTACATTGGTTGAAGCATTAGAAGGAAAACCACACGCAATAGAAGCGTGTGCAACCCGAAACAACGGAGTGGTTTCTGCTAGTGCTGAGGATGCTTGCACGCATGAACAAGATATGGAGAGAGCCATGTGCAAAACCAAGAATTGTGAAGAAGGGAAAAGCTCGCCTTCTTGTCCAGGAACTAATGAGAGGTCTAGCAGTCCTTACAGTCACATTTCTTCCGAGTTGGTCCATTTAGAGTCTCATCATAAAACTTTTCATAAGCGCTCTGCGGATATGATTGGCAATAAGGACAGCATGAATGATGCAAAGTTGTCCATGGACAACGAAGTTAAGGAGGATAAAGGAAGttctttttatttgaatattgGTAATAAATCTGATAAACCTGAAAATTCTTCTCCAAATATAGCtgatggttttaaattgtttgGCGTCGATCTACAAATGCATTCAAATTCAGGACAGAAAATCAATAGTTCGTTTGAAACCAGAGTTCTAGACACCTCCAATACAAATAAACCTTTGACAAACCAAAGCTCTTCAATGCAAAATTTTAGTATATCTGTCGAGCTTGTAAGTTTGGGATCTGTTATGTGTGGAAATCATTGGTGCAGTAAGCATGCAATATATCCAAAAGGATTCAAGAGTCGTGTTAAGTTCTTTAGCATTCTTGATCCAGCAAGCATCTGTTACTATGTTTCTGAAGTCATTGATGGTGGATTTCTTGGGCCTTTTTTCAGGGTCACCTTGGAAGAACAACCGAAAGAGGTTTTCACAAAGACCACAGCAGATAAGTGTTGGGAAACAGTTATGGACAGACTAAATTGTGAAATCAATCGGCGCACGAGTCTCGGTGAACTAAACATGCCCCCCTTGGAACTACTGAACAACATCAACGGTCATAAAATGTTTGGATTACTTTCGCCATCCATTATTCAGTCCATTGAAGCTCAAGATCCCAGTCATAAATGTGTAGAGTACTGGAATCACAAACAAGTTATTTTTGGATCTTCGGGCAAAGCCATTGATGACTCTAAGTTAACTTGTGGTTCAAGTAATAACTCTCTAGGTGACTTCAAGACCAAACTTTTTGGTATCGATTTGATAAAGGTGGAGGAAGATGACACTGGAGAAAGTTCTCATTCGTTTGAAGAGATGAAGTTGACCCTAGAAGGATTCCTAAAAAAGGCAAGTCCTAATGAGTTAAGAGCAATGCATACATTATTTAGCTCTAATGCAGAATTGACTCAGTGGAGACCGACATTGATGACGCTGATAGAGGAAATCCAGAAAGAATGTccataa 3063 0.3999 MVDLMFISCLLFIIIQLINFSFLCMHDILQDNPFRHEPKMENTFESFSSPQHKKISSRWDPFEACRPIIGEAPVFYPTYEEFKDTLGYIAKIRPLAEPYGICKVVPPACWVPPCPLKQKEIWENAKFPTRIQQVDLLQNREPMRKKTRGRKRKRGKQSKMGTCSRRMGNSCSEADATSESDDKFGFQSGPDFTLKEFQQYDNTFKDCYFESNDCKDGKVSNNNHLEKRKPSVEEMEGEYWRIIEQPTDEVEVYYGADLETGAFGSGFPKTSSLTKSDSDLYAKSGWNLNNFARLPGSALCFEGSDISGVLVPWLYVGMCFSSFCWHVEDHHLYSLNYLHWGDPKVWYGVPGSHASAMEDAMRKHMPDLFEENPNLLNELVTQFSPSILKSEGVPVYRTVQRSGEFVITFPRAYHCGFSCGFNCAEAVNAAPYDWFVHGQNAVEIYSLQCRKTSLSHDKLLFGSAKEAVQALAETTLHGKGSLKYLNWRNACGKDGVLTNAVKTRIVMEKERLDQLPNQLKMLKMDTDFDSVEERECFSCFYDLHLSAVGCECSPDSYSCLRHFKLFCSCEMDRRFVLVRYTMNELSTLVEALEGKPHAIEACATRNNGVVSASAEDACTHEQDMERAMCKTKNCEEGKSSPSCPGTNERSSSPYSHISSELVHLESHHKTFHKRSADMIGNKDSMNDAKLSMDNEVKEDKGSSFYLNIGNKSDKPENSSPNIADGFKLFGVDLQMHSNSGQKINSSFETRVLDTSNTNKPLTNQSSSMQNFSISVELVSLGSVMCGNHWCSKHAIYPKGFKSRVKFFSILDPASICYYVSEVIDGGFLGPFFRVTLEEQPKEVFTKTTADKCWETVMDRLNCEINRRTSLGELNMPPLELLNNINGHKMFGLLSPSIIQSIEAQDPSHKCVEYWNHKQVIFGSSGKAIDDSKLTCGSSNNSLGDFKTKLFGIDLIKVEEDDTGESSHSFEEMKLTLEGFLKKASPNELRAMHTLFSSNAELTQWRPTLMTLIEEIQKECP 1020
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00908 1020 Pfam jmjN domain 73 106 IPR003349 -
Tsu02g00908 1020 MobiDBLite consensus disorder prediction 635 656 - -
Tsu02g00908 1020 ProSiteProfiles JmjC domain profile. 283 446 IPR003347 -
Tsu02g00908 1020 SMART JmjN_1 71 112 IPR003349 -
Tsu02g00908 1020 MobiDBLite consensus disorder prediction 144 160 - -
Tsu02g00908 1020 SMART cupin_9 280 446 IPR003347 -
Tsu02g00908 1020 MobiDBLite consensus disorder prediction 138 183 - -
Tsu02g00908 1020 Gene3D - 772 911 - -
Tsu02g00908 1020 SMART fyrn_3 781 825 IPR003888 GO:0005634
Tsu02g00908 1020 SMART fyrc_3 831 927 IPR003889 GO:0005634
Tsu02g00908 1020 Pfam F/Y-rich N-terminus 774 822 IPR003888 GO:0005634
Tsu02g00908 1020 ProSiteProfiles FYR domain FYRC motif profile. 827 917 IPR003889 GO:0005634
Tsu02g00908 1020 Gene3D Cupin 57 430 - -
Tsu02g00908 1020 ProSiteProfiles JmjN domain profile. 72 113 IPR003349 -
Tsu02g00908 1020 PANTHER DEMETHYLASE JMJ14-LIKE PROTEIN, PUTATIVE-RELATED 26 724 - -
Tsu02g00908 1020 PANTHER DEMETHYLASE JMJ14-LIKE PROTEIN, PUTATIVE-RELATED 726 1018 - -
Tsu02g00908 1020 ProSiteProfiles FYR domain FYRN motif profile. 767 825 IPR003888 GO:0005634
Tsu02g00908 1020 SUPERFAMILY Clavaminate synthase-like 205 468 - -
Tsu02g00908 1020 Pfam F/Y rich C-terminus 829 916 IPR003889 GO:0005634
Tsu02g00908 1020 Pfam JmjC domain, hydroxylase 313 428 IPR003347 -
Tsu02g00908 1020 Pfam C5HC2 zinc finger 536 588 IPR004198 -
Tsu02g00908 1020 PANTHER LYSINE-SPECIFIC DEMETHYLASE 26 724 - -
Tsu02g00908 1020 PANTHER LYSINE-SPECIFIC DEMETHYLASE 726 1018 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00908 Tsu-Chr2 7611951 7616429 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g00908 80 1016 JUMONJI Transcription Factor Family AT4G20400 48.144 0.0 842
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Tsu02g00908 JmjC 7.4e-45 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00908 - - gmx:100784581 1422.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g00908 02 7611951 7616429 Tsu02g00908 02 7611951 7616429 ECH