Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00906 atgatgttgttgtttaAATTTGCAGCTATGCAGAGTCAAATTGTGTGTAATGGTTGTAGGAGCATGTTGCTTTACCCTAGAGGGGCAACCAATGTTTGTTGTGCATTGTGCAACACAATCACCCCTGTTCCTCCACCTGGGATGGATATGGCTCAACTATATTGTGGAGGCTGTAGGACATTGCTAATGTACACACGCGGGGCTACAAGTGTCAGGTGTTCTTGCTGTCACACTGTAAACCTTGCTCCAGCATCTAATCAAGTTGCCCATGTCCCTTGCGGGAACTGCCGAACAACACTCATGTATCCTTATGGAGCTCCTTCGGTCAAATGTGCTGTTTGTCACTATATTACTAATATCAATATGTCCAATGGAAGGGTTCCAATTCCTGTTCAAAGACCTAATGGGACACCCAACTCGGGAACGCTGCCTTCTACTTCAACaTCGATGCCCCAATCTCAGAGCCAAACAGTGGTGGTAGAAAATCCAATGTCTGTTGATTCAAGTGGGAAATTGGTGAGCAATGTTGTTGTTGGCGTTACAACAGATAAGAAATAA 558 0.4373 MMLLFKFAAMQSQIVCNGCRSMLLYPRGATNVCCALCNTITPVPPPGMDMAQLYCGGCRTLLMYTRGATSVRCSCCHTVNLAPASNQVAHVPCGNCRTTLMYPYGAPSVKCAVCHYITNINMSNGRVPIPVQRPNGTPNSGTLPSTSTSMPQSQSQTVVVENPMSVDSSGKLVSNVVVGVTTDKK 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00906 185 PANTHER LSD1-LIKE PROTEIN 10 183 - -
Tsu02g00906 185 MobiDBLite consensus disorder prediction 129 154 - -
Tsu02g00906 185 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 52 81 IPR005735 -
Tsu02g00906 185 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 90 119 IPR005735 -
Tsu02g00906 185 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 13 42 IPR005735 -
Tsu02g00906 185 Pfam LSD1 zinc finger 55 79 IPR005735 -
Tsu02g00906 185 Pfam LSD1 zinc finger 93 117 IPR005735 -
Tsu02g00906 185 Pfam LSD1 zinc finger 16 40 IPR005735 -
Tsu02g00906 185 PANTHER PROTEIN LSD1 10 183 IPR040319 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00906 Tsu-Chr2 7585105 7588921 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Tsu02g00906 zf-LSD1 1.9e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00906 - - mtr:MTR_8g089310 342.813
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g00906 02 7585105 7588921 Tsu02g00906 02 7585105 7588921 ECH